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基于各向异性核磁共振的结构解析中密度泛函理论对碳化学屏蔽各向异性预测的基准测试

Benchmark of Density Functional Theory in the Prediction of C Chemical Shielding Anisotropies for Anisotropic Nuclear Magnetic Resonance-Based Structural Elucidation.

作者信息

Ketzel Anton Florian, Li Xiaolu, Kaupp Martin, Sun Han, Schattenberg Caspar Jonas

机构信息

Institut für Chemie, Strukturelle Chemische Biologie und Cheminformatik, Technische Universität Berlin, Berlin 10623, Germany.

Research Unit of Structural Chemistry & Computational Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin 13125, Germany.

出版信息

J Chem Theory Comput. 2025 Jan 28;21(2):871-885. doi: 10.1021/acs.jctc.4c01407. Epub 2025 Jan 6.

Abstract

Density functional theory (DFT) calculations have emerged as a powerful theoretical toolbox for interpreting and analyzing the experimental nuclear magnetic resonance (NMR) spectra of chemical compounds. While DFT has been extensively used and benchmarked for isotropic NMR observables, the evaluation of the full chemical shielding tensor, which is necessary for interpreting residual chemical shift anisotropy (RCSA), has received much less attention, despite its recent applications in the structural elucidation of organic molecules. In this study, we present a comprehensive benchmark of carbon shielding anisotropies based on coupled cluster reference tensors taken from the NS372 benchmark data set. Additionally, we investigate the representation of the DFT-predicted shielding tensors, such as the eigenvalues and eigenvectors. Moreover, we evaluated how various DFT methods influence the discrimination of possible relative configurations using recently published ΔΔRCSA data for a set of structurally diverse natural products. Our findings demonstrate that accurate interpretation of RCSAs for configurational and conformational analysis is possible with semilocal DFT methods, which also reduce computational demands compared to hybrid functionals such as the commonly used B3LYP.

摘要

密度泛函理论(DFT)计算已成为解释和分析化合物实验核磁共振(NMR)光谱的强大理论工具箱。虽然DFT已被广泛用于各向同性NMR可观测量并进行了基准测试,但对于解释剩余化学位移各向异性(RCSA)所必需的完整化学屏蔽张量的评估,尽管其最近在有机分子结构解析中的应用,但受到的关注要少得多。在本研究中,我们基于取自NS372基准数据集的耦合簇参考张量,给出了碳屏蔽各向异性的全面基准。此外,我们研究了DFT预测的屏蔽张量的表示,如特征值和特征向量。此外,我们使用最近发表的一组结构多样的天然产物的ΔΔRCSA数据,评估了各种DFT方法如何影响对可能的相对构型的辨别。我们的研究结果表明,使用半局域DFT方法可以对RCSA进行准确的构型和构象分析解释,与常用的B3LYP等杂化泛函相比,半局域DFT方法还降低了计算需求。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd68/11780741/ed30a32862ce/ct4c01407_0001.jpg

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