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自然界中的非经典细胞色素P450酶

Non-Canonical Cytochrome P450 Enzymes in Nature.

作者信息

Nguy Andy K L, Ireland Kendra A, Kayrouz Chase M, Cáceres Juan Carlos, Greene Brandon L, Davis Katherine M, Seyedsayamdost Mohammad R

机构信息

Department of Chemistry, Princeton University, Princeton, NJ, USA.

These authors contributed equally.

出版信息

bioRxiv. 2024 Dec 23:2024.12.22.630014. doi: 10.1101/2024.12.22.630014.

Abstract

Cytochrome P450s (CYPs) are a superfamily of thiolate-ligated heme metalloenzymes principally responsible for the hydroxylation of unactivated C-H bonds. The lower-axial cysteine is an obligatory and universally conserved residue for the CYP enzyme class. Herein, we challenge this paradigm by systematically identifying non-canonical CYPs (ncCYPs) that do not harbor a cysteine ligand. Our bioinformatic search reveals 20 distinct ncCYP families with diverse ligands encoded in microbial genomes. We characterize a native serine-ligated CYP with a high-spin ferric resting state. Its crystal structure clearly shows a typical CYP fold and a serine alkoxide as a lower axial heme ligand. In addition, we report the discovery and characterization of the first native selenocysteine-ligated CYP in nature. Our findings radically expand the CYP metalloenzyme family.

摘要

细胞色素P450(CYPs)是一类硫醇盐连接的血红素金属酶超家族,主要负责未活化C-H键的羟基化反应。对于CYP酶家族而言,位于血红素下方轴位的半胱氨酸是一个必不可少且普遍保守的残基。在此,我们通过系统鉴定不含半胱氨酸配体的非典型CYPs(ncCYPs)对这一范式提出了挑战。我们的生物信息学搜索揭示了微生物基因组中编码的20个不同的ncCYP家族,它们具有多样的配体。我们表征了一种具有高自旋铁静止状态的天然丝氨酸连接的CYP。其晶体结构清楚地显示出典型的CYP折叠以及作为下方轴位血红素配体的丝氨酸醇盐。此外,我们报告了自然界中首个天然硒代半胱氨酸连接的CYP的发现与表征。我们的发现从根本上扩展了CYP金属酶家族。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd0e/11703216/b15a66f86805/nihpp-2024.12.22.630014v1-f0001.jpg

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