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鉴定[具体内容]作为从巴雷特食管进展为食管腺癌的潜在生物标志物:一项全面的生物信息学分析。 (注:原文中“Identification of as a Potential Biomarker...”这里“Identification of”后面缺少具体所鉴定的内容)

Identification of as a Potential Biomarker for Progression from Barrett's Esophagus to Esophageal Adenocarcinoma: A Comprehensive Bioinformatic Analysis.

作者信息

Qureshi Sajida, Abbasi Waqas Ahmad, Qureshi Muhammad Asif, Jalil Hira Abdul, Quraishy Muhammad Saeed

机构信息

Dow Medical College, Dow University of Health Sciences, Karachi 74200, Pakistan.

出版信息

Diagnostics (Basel). 2024 Dec 19;14(24):2863. doi: 10.3390/diagnostics14242863.

Abstract

: Barrett's esophagus (BE), with metaplastic columnar epithelium in the lower esophagus, predisposes patients to esophageal adenocarcinoma (EAC). Despite extensive research, mechanisms underlying BE progression to EAC remain unclear, and no validated biomarkers are available for clinical use. Progastricsin/Pepsinogen-C (PGC), an aspartic proteinase linked to maintaining normal epithelial morphology, is often absent in advanced gastrointestinal malignancies. This study comprehensively investigates PGC expression across cancers, particularly in esophageal cancer (ESCA), to clarify its role in BE progression to EAC. : We utilized multiple bioinformatic platforms (TIMER, UALCAN, cBioPortal, GEPIA, STRING, Metascape, and GEO database) to assess expression, genomic alterations, and correlations with clinicopathological features, survival, and immune infiltration. Additionally, using the GEO dataset, we compared non-dysplastic Barrett's esophagus (NDBE) patients with those who progressed to malignancy, identifying differentially expressed genes (DEGs), their interactions, and potential roles in progression. : was notably upregulated in various cancers, especially in adjacent normal tissues of ESCA. Genomic amplifications of were linked to improved survival in EAC patients, particularly those with high expression, suggesting a protective role. Moreover, expression positively correlated with favorable immune infiltration, notably B cells and CD8+ T cells. Enrichment analysis of downregulated DEGs revealed significant involvement in key biological processes, specifically in extracellular matrix organization. Among the downregulated DEGs, we identified among the top 10 hub genes, underscoring its role in tissue homeostasis. : These findings suggest that could serve as a promising biomarker for predicting the high-risk transformation from BE to EAC, offering new insights into EAC progression and future therapeutic targets.

摘要

巴雷特食管(BE)在食管下段存在化生柱状上皮,使患者易患食管腺癌(EAC)。尽管进行了广泛研究,但BE进展为EAC的潜在机制仍不清楚,且尚无经过验证的生物标志物可用于临床。胃蛋白酶原C(PGC)是一种与维持正常上皮形态相关的天冬氨酸蛋白酶,在晚期胃肠道恶性肿瘤中常缺失。本研究全面调查了PGC在各种癌症中的表达情况,特别是在食管癌(ESCA)中的表达,以阐明其在BE进展为EAC过程中的作用。我们利用多个生物信息学平台(TIMER、UALCAN、cBioPortal、GEPIA、STRING、Metascape和GEO数据库)来评估PGC的表达、基因组改变及其与临床病理特征、生存和免疫浸润的相关性。此外,利用GEO数据集,我们比较了非发育异常的巴雷特食管(NDBE)患者和进展为恶性肿瘤的患者,确定了差异表达基因(DEG)、它们的相互作用以及在进展中的潜在作用。PGC在各种癌症中显著上调,尤其是在ESCA的相邻正常组织中。PGC的基因组扩增与EAC患者的生存改善相关,特别是那些高表达PGC的患者,表明其具有保护作用。此外,PGC表达与良好的免疫浸润呈正相关,特别是B细胞和CD8 + T细胞。对下调的DEG进行富集分析发现,它们显著参与关键生物学过程,特别是细胞外基质组织。在下调的DEG中,我们确定[基因名称]在十大枢纽基因中,突出了其在组织稳态中的作用。这些发现表明,PGC可能是预测BE向EAC高危转化的有前景的生物标志物,为EAC进展和未来治疗靶点提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9a1e/11675858/a2339beea7ae/diagnostics-14-02863-g001.jpg

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