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SF3B1:从核心剪接因子到致癌驱动因子。

SF3B1: from core splicing factor to oncogenic driver.

作者信息

Bak-Gordon Pedro, Manley James L

机构信息

Department of Biological Sciences, Columbia University, New York, New York 10027, USA.

Department of Biological Sciences, Columbia University, New York, New York 10027, USA

出版信息

RNA. 2025 Feb 19;31(3):314-332. doi: 10.1261/rna.080368.124.

DOI:10.1261/rna.080368.124
PMID:39773890
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11874996/
Abstract

Highly recurrent somatic mutations in the gene encoding the core splicing factor SF3B1 are drivers of multiple cancer types. SF3B1 is a scaffold protein that orchestrates multivalent protein-protein interactions within the spliceosome that are essential for recognizing the branchsite (BS) and selecting the 3' splice site during the earliest stage of pre-mRNA splicing. In this review, we first describe the molecular mechanism by which multiple oncogenic mutations disrupt splicing. This involves perturbation of an early spliceosomal trimeric protein complex necessary for accurate BS recognition in a subset of introns, which leads to activation of upstream branchpoints and selection of cryptic 3' splice sites. We next discuss how specific transcripts affected by aberrant splicing in -mutant cells contribute to the initiation and progression of cancer. Finally, we highlight the prognostic value and disease phenotypes of different cancer-associated mutations, which is critical for developing new targeted therapeutics against -mutant cancers still lacking in the clinic.

摘要

编码核心剪接因子SF3B1的基因中高度复发的体细胞突变是多种癌症类型的驱动因素。SF3B1是一种支架蛋白,它协调剪接体内的多价蛋白质-蛋白质相互作用,这些相互作用对于在前体mRNA剪接的最早阶段识别分支位点(BS)和选择3'剪接位点至关重要。在本综述中,我们首先描述多种致癌突变破坏剪接的分子机制。这涉及扰乱在一部分内含子中准确识别BS所需的早期剪接体三聚体蛋白复合物,从而导致上游分支点的激活和隐蔽3'剪接位点的选择。接下来,我们讨论突变细胞中受异常剪接影响的特定转录本如何促进癌症的发生和发展。最后,我们强调不同癌症相关突变的预后价值和疾病表型,这对于开发针对临床上仍缺乏的突变癌症的新靶向治疗方法至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e74/11874996/9e189e6b176a/314f03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e74/11874996/3455581ba799/314f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e74/11874996/6976d47fb323/314f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e74/11874996/9e189e6b176a/314f03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e74/11874996/3455581ba799/314f01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e74/11874996/6976d47fb323/314f02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4e74/11874996/9e189e6b176a/314f03.jpg

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本文引用的文献

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Steering research on mRNA splicing in cancer towards clinical translation.推动癌症中 mRNA 剪接的研究向临床转化。
Nat Rev Cancer. 2024 Dec;24(12):887-905. doi: 10.1038/s41568-024-00750-2. Epub 2024 Oct 9.
2
Modeling the temporal dynamics of clonal hematopoiesis.模拟克隆性造血的时间动态变化。
Nat Cardiovasc Res. 2022 Jun;1(6):537-538. doi: 10.1038/s44161-022-00086-w.
3
Molecular impact of mutations in RNA splicing factors in cancer.RNA 剪接因子突变在癌症中的分子影响。
Mol Cell. 2024 Oct 3;84(19):3667-3680. doi: 10.1016/j.molcel.2024.07.019. Epub 2024 Aug 14.
4
The E592K variant of SF3B1 creates unique RNA missplicing and associates with high-risk MDS without ring sideroblasts.SF3B1 的 E592K 变体导致独特的 RNA 剪接异常,并与不伴有环形铁幼粒细胞的 MDS 高危组相关。
Blood Adv. 2024 Aug 13;8(15):3961-3971. doi: 10.1182/bloodadvances.2023011260.
5
GPATCH8 modulates mutant SF3B1 mis-splicing and pathogenicity in hematologic malignancies.GPATCH8 调节血液系统恶性肿瘤中突变 SF3B1 的剪接错误和致病性。
Mol Cell. 2024 May 16;84(10):1886-1903.e10. doi: 10.1016/j.molcel.2024.04.006. Epub 2024 Apr 29.
6
The splicing regulators RBM5 and RBM10 are subunits of the U2 snRNP engaged with intron branch sites on chromatin.剪接调控因子 RBM5 和 RBM10 是与染色质上内含子分支位点结合的 U2 snRNP 的亚基。
Mol Cell. 2024 Apr 18;84(8):1496-1511.e7. doi: 10.1016/j.molcel.2024.02.039. Epub 2024 Mar 26.
7
Molecular International Prognostic Scoring System for Myelodysplastic Syndromes.骨髓增生异常综合征的分子国际预后评分系统
NEJM Evid. 2022 Jul;1(7):EVIDoa2200008. doi: 10.1056/EVIDoa2200008. Epub 2022 Jun 12.
8
Structural insights into branch site proofreading by human spliceosome.人类剪接体的分支位点校对的结构见解
Nat Struct Mol Biol. 2024 May;31(5):835-845. doi: 10.1038/s41594-023-01188-0. Epub 2024 Jan 9.
9
The function of alternative splicing in the proteome: rewiring protein interactomes to put old functions into new contexts.可变剪接在蛋白质组中的作用:重新连接蛋白质相互作用组,将旧功能置于新环境中。
Nat Struct Mol Biol. 2023 Dec;30(12):1844-1856. doi: 10.1038/s41594-023-01155-9. Epub 2023 Nov 30.
10
Characterization of the SF3B1-SUGP1 interface reveals how numerous cancer mutations cause mRNA missplicing.鉴定 SF3B1-SUGP1 界面揭示了大量癌症突变如何导致 mRNA 剪接错误。
Genes Dev. 2023 Dec 26;37(21-24):968-983. doi: 10.1101/gad.351154.123.