探究癌症中突变特征的起源。
Investigating the origins of the mutational signatures in cancer.
作者信息
Boysen Gunnar, Alexandrov Ludmil B, Rahbari Raheleh, Nookaew Intawat, Ussery Dave, Chao Mu-Rong, Hu Chiung-Wen, Cooke Marcus S
机构信息
Department of Environmental Health Science, University of Arkansas for Medical Sciences, 4301 West Markham St, Little Rock, AR 72205, USA.
The Winthrop P Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, 4301 West Markham St, Little Rock, AR 72205, USA.
出版信息
Nucleic Acids Res. 2025 Jan 7;53(1). doi: 10.1093/nar/gkae1303.
Most of the risk factors associated with chronic and complex diseases, such as cancer, stem from exogenous and endogenous exposures experienced throughout an individual's life, collectively known as the exposome. These exposures can modify DNA, which can subsequently lead to the somatic mutations found in all normal and tumor tissues. Understanding the precise origins of specific somatic mutations has been challenging due to multitude of DNA adducts (i.e. the DNA adductome) and their diverse positions within the genome. Thus far, this limitation has prevented researchers from precisely linking exposures to DNA adducts and DNA adducts to subsequent mutational outcomes. Indeed, many common mutations observed in human cancers appear to originate from error-prone endogenous processes. Consequently, it remains unclear whether these mutations result from exposure-induced DNA adducts, or arise indirectly from endogenous processes or are a combination of both. In this review, we summarize approaches that aim to bridge our understanding of the mechanism by which exposure leads to DNA damage and then to mutation and highlight some of the remaining challenges and shortcomings to fully supporting this paradigm. We emphasize the need to integrate cellular DNA adductomics, long read-based mapping, single-molecule duplex sequencing of native DNA molecules and advanced computational analysis. This proposed holistic approach aims to unveil the causal connections between key DNA modifications and the mutational landscape, whether they originate from external exposures, internal processes or a combination of both, thereby addressing key questions in cancer biology.
大多数与慢性和复杂疾病(如癌症)相关的风险因素都源于个体一生中经历的外源性和内源性暴露,统称为暴露组。这些暴露会修饰DNA,进而导致在所有正常组织和肿瘤组织中发现的体细胞突变。由于大量的DNA加合物(即DNA加合物组)及其在基因组中的不同位置,了解特定体细胞突变的确切起源一直具有挑战性。到目前为止,这一限制使得研究人员无法精确地将暴露与DNA加合物联系起来,也无法将DNA加合物与随后的突变结果联系起来。事实上,在人类癌症中观察到的许多常见突变似乎都源于易出错的内源性过程。因此,尚不清楚这些突变是由暴露诱导的DNA加合物引起的,还是间接源于内源性过程,抑或是两者的结合。在这篇综述中,我们总结了一些方法,旨在增进我们对暴露导致DNA损伤进而导致突变的机制的理解,并强调了在充分支持这一范式方面仍然存在的一些挑战和不足。我们强调需要整合细胞DNA加合物组学、基于长读长的图谱绘制、天然DNA分子的单分子双链测序和先进的计算分析。这种提议的整体方法旨在揭示关键DNA修饰与突变格局之间的因果联系,无论它们是源于外部暴露、内部过程还是两者的结合,从而解决癌症生物学中的关键问题。