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揭示球囊菌门内的多样性:新分支、科的分布及土地利用敏感性

Uncovering Diversity within the Glomeromycota: Novel Clades, Family Distributions, and Land Use Sensitivity.

作者信息

Delavaux Camille S, Aellen Alexis, Stürmer Sidney L, Primier Silmar, Schütte Ursel M E, Drown Devin M, Ramos Robert J, Crowther Thomas W, Bever James D

机构信息

Institute of Integrative Biology ETH Zurich (Swiss Federal Institute of Technology) Zurich Switzerland.

Department of Ecology and Evolutionary Biology The University of Kansas Lawrence Kansas USA.

出版信息

Ecol Evol. 2025 Jan 8;15(1):e70597. doi: 10.1002/ece3.70597. eCollection 2025 Jan.

DOI:10.1002/ece3.70597
PMID:39790729
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11711058/
Abstract

Arbuscular mycorrhizal fungi (AMF, phylum Glomeromycota) are essential to plant community diversity and ecosystem functioning. However, increasing human land use represents a major threat to native AMF globally. Characterizing the loss of AMF diversity remains challenging because many taxa are undescribed, resulting in poor documentation of their biogeography and family-level disturbance sensitivity. We survey sites representing native and human-altered ecosystems across the American continents-in Alaska, Kansas, and Brazil-to shed light on these gaps. Using a recently developed pipeline for phylogenetic placement of eDNA, we find evidence for three putative novel clades within the Glomeromycota, sister to , , and , with evidence for geographic structuring. We further find that taxa in the , , and relatively high families are overrepresented and more diverse in temperate samples. By contrast, the diversity of taxa that cannot be placed into a family is higher in tropical samples, suggesting that tropical sites harbor relatively high undescribed AMF diversity. Moreover, we find evidence that is more tolerant, while is more sensitive to disturbance. These results underscore the vast undescribed diversity of AMF while highlighting a way forward to systematically improve our understanding of AMF biogeography and response to human disturbance.

摘要

丛枝菌根真菌(AMF,球囊菌门)对植物群落多样性和生态系统功能至关重要。然而,人类土地利用的增加对全球原生AMF构成了重大威胁。由于许多分类群尚未被描述,因此描述AMF多样性的丧失仍然具有挑战性,这导致它们的生物地理学和科级干扰敏感性的记录不佳。我们对美洲大陆(阿拉斯加、堪萨斯和巴西)代表原生和人类改变生态系统的地点进行了调查,以揭示这些差距。使用最近开发的用于eDNA系统发育定位的流程,我们发现了球囊菌门内三个假定的新分支的证据,它们分别是、和的姐妹分支,并具有地理结构的证据。我们进一步发现,在温带样本中,、和相对较高的科中的分类群数量过多且更加多样化。相比之下,无法归入某个科的分类群的多样性在热带样本中更高,这表明热带地区蕴藏着相对较高的未描述的AMF多样性。此外,我们发现有证据表明更具耐受性,而对干扰更敏感。这些结果强调了AMF存在大量未描述的多样性,同时突出了一条系统地改善我们对AMF生物地理学和对人类干扰反应的理解的前进道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/efdf644b4103/ECE3-15-e70597-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/00438150af88/ECE3-15-e70597-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/0e96c2c26949/ECE3-15-e70597-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/bf8a58f64e21/ECE3-15-e70597-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/726cf689aa07/ECE3-15-e70597-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/efdf644b4103/ECE3-15-e70597-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/00438150af88/ECE3-15-e70597-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/0e96c2c26949/ECE3-15-e70597-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/bf8a58f64e21/ECE3-15-e70597-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/726cf689aa07/ECE3-15-e70597-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e2f5/11711058/efdf644b4103/ECE3-15-e70597-g003.jpg

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本文引用的文献

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An updated LSU database and pipeline for environmental DNA identification of arbuscular mycorrhizal fungi.一个更新的 LSU 数据库和管道,用于环境 DNA 鉴定丛枝菌根真菌。
Mycorrhiza. 2024 Jul;34(4):369-373. doi: 10.1007/s00572-024-01159-3. Epub 2024 Jun 29.
2
GlobalAMFungi: a global database of arbuscular mycorrhizal fungal occurrences from high-throughput sequencing metabarcoding studies.全球 AMFungi:一个基于高通量测序宏条形码研究的丛枝菌根真菌出现的全球数据库。
New Phytol. 2023 Dec;240(5):2151-2163. doi: 10.1111/nph.19283. Epub 2023 Oct 2.
3
Native Microbes Amplify Native Seedling Establishment and Diversity While Inhibiting a Non-Native Grass.
本地微生物可促进本地幼苗的定植和多样性,同时抑制一种外来草类。
Plants (Basel). 2023 Mar 6;12(5):1184. doi: 10.3390/plants12051184.
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Arbuscular Mycorrhizal Fungi Taxa Show Variable Patterns of Micro-Scale Dispersal in Prairie Restorations.丛枝菌根真菌类群在草原恢复中呈现出微尺度扩散的可变模式。
Front Microbiol. 2022 Jul 22;13:827293. doi: 10.3389/fmicb.2022.827293. eCollection 2022.
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Best practices in metabarcoding of fungi: From experimental design to results.真菌代谢条形码分析的最佳实践:从实验设计到结果
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Core arbuscular mycorrhizal fungi are predicted by their high abundance-occupancy relationship while host-specific taxa are rare and geographically structured.核心丛枝菌根真菌通过其高丰度-占有率关系得以预测,而宿主特异性类群则较为罕见且具有地理结构。
New Phytol. 2022 May;234(4):1464-1476. doi: 10.1111/nph.18058. Epub 2022 Mar 21.
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Global taxonomic and phylogenetic assembly of AM fungi.全球 AM 真菌的分类学和系统发育组装。
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