phylotypr：一个用于对DNA序列进行分类的R软件包。
phylotypr: an R package for classifying DNA sequences.
作者信息
Schloss Patrick D
机构信息
Department of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, USA.
出版信息
Microbiol Resour Announc. 2025 Feb 11;14(2):e0114424. doi: 10.1128/mra.01144-24. Epub 2025 Jan 14.
Abstract
The phylotypr R package implements the popular naive Bayesian classification algorithm that is frequently used to classify 16S rRNA and other gene sequences to taxonomic lineages. A companion data package, phylotyprrefdata, also provides numerous versions of taxonomic databases from the Ribosomal Database Project, SILVA, and greengenes.
摘要
phylotypr R软件包实现了常用的朴素贝叶斯分类算法，该算法经常用于将16S rRNA和其他基因序列分类到分类谱系中。配套的数据包phylotyprrefdata还提供了来自核糖体数据库项目、SILVA和绿基因的多个版本的分类数据库。
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