Aroule Olivier, Zins Emilie-Laure
Sorbonne Université, CNRS, "De la Molécule aux Nano-Objets : Réactivité, Interactions et Spectroscopies", MONARIS, UMR 8233, 4 Place Jussieu, Paris, 75005, France.
J Mol Model. 2025 Jan 14;31(2):48. doi: 10.1007/s00894-024-06249-9.
A chemical reaction can be described, from a physicochemical perspective, as a redistribution of electron density. Additionally, non-covalent interactions locally modify the electron density distribution. This study aims to characterize the modification of reactivity caused by the presence of non-covalent interactions such as hydrogen bonds, in a reaction involving the formation of two bonds and the breaking of two others: CH₃COOH + NH₂CH₃ → CH₃CONHCH₃.
In this work, we will follow the how a reaction mechanism involving the formation of two chemical bonds and the breaking of two other chemical bonds is affected by non-covalent interaction. To this end, the reaction force will be used to define the region of the reagents, the region of the transition state, and the region of the products. We will analyze the redistributions of electron density and electron pairs in each of the regions of the reaction mechanisms, using QTAIM and ELF, topological analyses, respectively, for the reaction between methylamine and acetic acid, in the presence of 0 to 4 water molecules. DFT calculations were carried out at the LC-ωPBE/6-311 + + G(d,p) + GD3BJ level along the intrinsic reaction coordinate of the one-step reaction leading to the formation of methylacetamide.
从物理化学角度来看,化学反应可描述为电子密度的重新分布。此外,非共价相互作用会局部改变电子密度分布。本研究旨在表征在涉及形成两个键和断裂另外两个键的反应(CH₃COOH + NH₂CH₃ → CH₃CONHCH₃)中,诸如氢键等非共价相互作用的存在所引起的反应性变化。
在本工作中,我们将追踪涉及形成两个化学键和断裂另外两个化学键的反应机理是如何受到非共价相互作用影响的。为此,将使用反应力来定义反应物区域、过渡态区域和产物区域。我们将分别使用QTAIM和ELF拓扑分析方法,分析在存在0至4个水分子的情况下,甲胺与乙酸反应的反应机理各区域中的电子密度和电子对的重新分布情况。在LC - ωPBE/6 - 311 + + G(d,p) + GD3BJ水平上,沿着导致形成甲基乙酰胺的一步反应的内禀反应坐标进行密度泛函理论(DFT)计算。