Valenčič Eva, Beckett Emma, Bucher Tamara, Collins Clare E, Koroušić Seljak Barbara
Computer Systems Department, Jožef Stefan Institute, Ljubljana, Slovenia.
Jožef Stefan International Postgraduate School, Ljubljana, Slovenia.
Front Nutr. 2025 Jan 6;11:1503389. doi: 10.3389/fnut.2024.1503389. eCollection 2024.
Contemporary data and knowledge management and exploration are challenging due to regular releases, updates, and different types and formats. In the food and nutrition domain, solutions for integrating such data and knowledge with respect to the FAIR (Findability, Accessibility, Interoperability, and Reusability) principles are still lacking.
To address this issue, we have developed a data and knowledge management system called NutriBase, which supports the compilation of a food composition database and its integration with evidence-based knowledge. This research is a novel contribution because it allows for the interconnection and complementation of food composition data with knowledge and takes what has been done in the past a step further by enabling the integration of knowledge. NutriBase focuses on two important challenges; data (semantic) harmonization by using the existing ontologies, and reducing missing data by semi-automatic data imputation made from conflating with existing databases.
The developed web-based tool is highly modifiable and can be further customized to meet national or international requirements. It can help create and maintain the quality management system needed to assure data quality. Newly generated data and knowledge can continuously be added, as interoperability with other systems is enabled. The tool is intended for use by domain experts, food compilers, and researchers who can add and edit food-relevant data and knowledge. However, the tool is also accessible to food manufacturers, who can regularly update information about their products and thus give consumers access to current data. Moreover, the traceability of the data and knowledge provenance allows the compilation of a trustworthy management system. The system is designed to allow easy integration of data from different sources, which enables data borrowing and reduction of missing data. In this paper, the feasibility of NutriBase is demonstrated on Slovenian food-related data and knowledge, which is further linked with international resources. Outputs such as matched food components and food classifications have been integrated into semantic resources that are currently under development in various international projects.
由于数据定期发布、更新以及存在不同的类型和格式,当代数据和知识管理与探索面临挑战。在食品与营养领域,仍缺乏依据FAIR(可查找性、可访问性、互操作性和可重用性)原则整合此类数据和知识的解决方案。
为解决这一问题,我们开发了一个名为NutriBase的数据和知识管理系统,该系统支持食品成分数据库的编纂及其与循证知识的整合。这项研究具有创新性,因为它允许食品成分数据与知识相互连接和补充,并通过实现知识整合,在以往工作基础上更进一步。NutriBase关注两个重要挑战:利用现有本体进行数据(语义)协调,以及通过与现有数据库合并进行半自动数据插补来减少缺失数据。
所开发的基于网络的工具具有高度可修改性,可进一步定制以满足国家或国际要求。它有助于创建和维护确保数据质量所需的质量管理系统。由于具备与其他系统的互操作性,新生成的数据和知识可不断添加。该工具供领域专家、食品编纂人员和研究人员使用,他们可添加和编辑与食品相关的数据和知识。不过,食品制造商也可使用该工具,他们能够定期更新其产品信息,从而使消费者能够获取最新数据。此外,数据和知识来源的可追溯性有助于编纂一个可靠的管理系统。该系统旨在便于整合来自不同来源的数据,从而实现数据借用并减少缺失数据。在本文中,NutriBase在斯洛文尼亚与食品相关的数据和知识上的可行性得到了证明,这些数据和知识进一步与国际资源相链接。诸如匹配的食品成分和食品分类等输出已被整合到目前在各个国际项目中正在开发的语义资源中。