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通过振动激发对单分子构象转变进行纳米级操纵。

Nanoscale Manipulation of Single-Molecule Conformational Transition through Vibrational Excitation.

作者信息

Quan Weike, Wang Zihao, Shi Yueqing, Liang Kangkai, Bi Liya, Zhou Hao, Yin Zhiyuan, Li Wan-Lu, Li Shaowei

机构信息

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093-0309, United States.

Program in Materials Science and Engineering, University of California, San Diego, La Jolla, California 92093-0418, United States.

出版信息

J Am Chem Soc. 2025 Feb 5;147(5):4504-4510. doi: 10.1021/jacs.4c16218. Epub 2025 Jan 22.

DOI:10.1021/jacs.4c16218
PMID:39841070
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11803746/
Abstract

Controlling molecular actions on demand is a critical step toward developing single-molecule functional devices. Such control can be achieved by manipulating the interactions between individual molecules and their nanoscale environment. In this study, we demonstrate the conformational transition of a single pyrrolidine molecule adsorbed on a Cu(100) surface, driven by vibrational excitation through tunneling electrons using scanning tunneling microscopy. We identify multiple transition pathways between two structural states, each governed by distinct vibrational modes. The nuclear motions corresponding to these modes are elucidated through density functional theory calculations. By leveraging fundamental forces, including van der Waals interactions, dipole-dipole interactions, and steric hindrance, we precisely tune the molecule-environment coupling. This tuning enables the modulation of vibrational energies, adjustment of transition probabilities, and selection of the lowest-energy transition pathway. Our findings highlight how tunable force fields in a nanoscale cavity can govern molecular conformational transitions, providing a pathway to engineer molecule-environment interactions for targeted molecular functionalities.

摘要

按需控制分子行为是开发单分子功能器件的关键一步。这种控制可以通过操纵单个分子与其纳米级环境之间的相互作用来实现。在本研究中,我们利用扫描隧道显微镜,通过隧穿电子的振动激发,展示了吸附在Cu(100)表面的单个吡咯烷分子的构象转变。我们确定了两个结构状态之间的多个转变途径,每个途径由不同的振动模式控制。通过密度泛函理论计算阐明了与这些模式相对应的核运动。通过利用包括范德华相互作用、偶极-偶极相互作用和空间位阻在内的基本力,我们精确地调节了分子-环境耦合。这种调节能够调制振动能量、调整转变概率并选择最低能量的转变途径。我们的研究结果突出了纳米级腔中可调谐力场如何控制分子构象转变,为设计具有目标分子功能的分子-环境相互作用提供了一条途径。

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本文引用的文献

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Molecular-Scale Visualization of Steric Effects of Ligand Binding to Reconstructed Au(111) Surfaces.配体与重构的Au(111)表面结合的空间效应的分子尺度可视化
J Am Chem Soc. 2024 May 1;146(17):11764-11772. doi: 10.1021/jacs.4c00002. Epub 2024 Apr 16.
2
Submolecular-scale control of phototautomerization.光互变异构的亚分子尺度控制
Nat Nanotechnol. 2024 Jun;19(6):738-743. doi: 10.1038/s41565-024-01622-4. Epub 2024 Feb 27.
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Origin of photoinduced DC current and two-level population dynamics in a single molecule.单分子中光致直流电流的起源及双能级粒子数动力学
Sci Adv. 2024 Feb 2;10(5):eadk9211. doi: 10.1126/sciadv.adk9211. Epub 2024 Jan 31.
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Manipulating Quantum Interference between σ and π Orbitals in Single-Molecule Junctions via Chemical Substitution and Environmental Control.通过化学取代和环境控制来操纵单分子结中σ轨道和π轨道之间的量子干涉。
ACS Nano. 2023 Aug 22;17(16):16107-16114. doi: 10.1021/acsnano.3c04963. Epub 2023 Aug 4.
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Chirality control of a single carbene molecule by tip-induced van der Waals interactions.通过针尖诱导的范德华相互作用实现单个卡宾分子的手性控制。
Nat Commun. 2023 Jul 26;14(1):4500. doi: 10.1038/s41467-023-39870-y.
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Effect of intramolecular hydrogen-bond formation on the molecular conformation of amino acids.分子内氢键形成对氨基酸分子构象的影响。
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Importance of tautomerism in drugs.互变异构在药物中的重要性。
Drug Discov Today. 2023 Apr;28(4):103494. doi: 10.1016/j.drudis.2023.103494. Epub 2023 Jan 18.
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Atomically precise binding conformations of adenine and its variants on gold using single molecule conductance signatures.利用单分子电导特征研究腺嘌呤及其变体在金表面的原子精确结合构象。
J Chem Phys. 2022 Dec 21;157(23):234201. doi: 10.1063/5.0103642.
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Nat Commun. 2022 Oct 22;13(1):6305. doi: 10.1038/s41467-022-33897-3.
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