• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

染色体水平的基因组动态揭示了古老无性螨类独立单倍型进化的特征。

Chromosome-scale genome dynamics reveal signatures of independent haplotype evolution in the ancient asexual mite .

作者信息

Öztoprak Hüsna, Gao Shan, Guiglielmoni Nadège, Brandt Alexander, Zheng Yichen, Errbii Mohammed, Bednarski Viktoria, Becker Christian, Becker Kerstin, Borgschulte Lea, Burak Katharina Atsuko, Dion-Côté Anne-Marie, Leonov Vladislav, Opherden Linda, Shimano Satoshi, Bast Jens

机构信息

Institute of Zoology, University of Cologne, Cologne, Germany.

Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.

出版信息

Sci Adv. 2025 Jan 24;11(4):eadn0817. doi: 10.1126/sciadv.adn0817.

DOI:10.1126/sciadv.adn0817
PMID:39854451
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11758997/
Abstract

Some unique asexual species persist over time and contradict the consensus that sex is a prerequisite for long-term evolutionary survival. How they escape the dead-end fate remains enigmatic. Here, we generated a haplotype-resolved genome assembly on the basis of a single individual and collected genomic data from worldwide populations of the parthenogenetic diploid oribatid mite to identify signatures of persistence without sex. We found that haplotypes diverge independently since the transition to asexuality at least 20 million years ago in European lineages, contrasting Japanese and Canadian lineages. Multiple lines of evidence indicate conservation of one haplotype copy and relaxed selection in the other for the ancient asexual lineages. These findings highlight the evolutionary genomic singularities of ancient asexual oribatid mites that may have contributed to escaping the early demise typically associated with asexuality.

摘要

一些独特的无性物种长期存在,这与“有性生殖是长期进化生存的先决条件”这一共识相矛盾。它们如何逃脱走向死胡同的命运仍然是个谜。在这里,我们基于单个个体生成了一个单倍型解析的基因组组装,并从世界各地孤雌生殖的二倍体甲螨种群中收集了基因组数据,以识别无性生殖的持久性特征。我们发现,自至少2000万年前向无性生殖转变以来,欧洲谱系中的单倍型独立分化,这与日本和加拿大谱系形成对比。多条证据表明,古老的无性谱系中一个单倍型拷贝得以保留,而另一个则经历了放松选择。这些发现突出了古老的无性甲螨在进化基因组学上的独特之处,这些独特之处可能有助于它们逃脱通常与无性生殖相关的早期灭亡。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11758997/98a4bb0eb29e/sciadv.adn0817-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11758997/78f5d3592c47/sciadv.adn0817-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11758997/46a85a0befcf/sciadv.adn0817-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11758997/98a4bb0eb29e/sciadv.adn0817-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11758997/78f5d3592c47/sciadv.adn0817-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11758997/46a85a0befcf/sciadv.adn0817-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11758997/98a4bb0eb29e/sciadv.adn0817-f3.jpg

相似文献

1
Chromosome-scale genome dynamics reveal signatures of independent haplotype evolution in the ancient asexual mite .染色体水平的基因组动态揭示了古老无性螨类独立单倍型进化的特征。
Sci Adv. 2025 Jan 24;11(4):eadn0817. doi: 10.1126/sciadv.adn0817.
2
Haplotype divergence supports long-term asexuality in the oribatid mite .单体型分歧支持食木甲螨的长期无性繁殖。
Proc Natl Acad Sci U S A. 2021 Sep 21;118(38). doi: 10.1073/pnas.2101485118.
3
Effective purifying selection in ancient asexual oribatid mites.古代无性甲螨中的有效净化选择。
Nat Commun. 2017 Oct 12;8(1):873. doi: 10.1038/s41467-017-01002-8.
4
High genetic divergences indicate ancient separation of parthenogenetic lineages of the oribatid mite Platynothrus peltifer (Acari, Oribatida).高度的遗传差异表明甲螨Platynothrus peltifer(蜱螨亚纲,甲螨目)孤雌生殖谱系的古老分化。
J Evol Biol. 2007 Jan;20(1):392-402. doi: 10.1111/j.1420-9101.2006.01183.x.
5
No evidence for the 'Meselson effect' in parthenogenetic oribatid mites (Oribatida, Acari).单性生殖甲螨(甲螨目,蜱螨亚纲)中不存在“梅塞尔森效应”的证据。
J Evol Biol. 2006 Jan;19(1):184-93. doi: 10.1111/j.1420-9101.2005.00975.x.
6
Radiation in sexual and parthenogenetic oribatid mites (Oribatida, Acari) as indicated by genetic divergence of closely related species.通过近缘物种的遗传分化表明有性生殖和孤雌生殖甲螨(甲螨目,蜱螨亚纲)中的辐射现象。
Exp Appl Acarol. 2003;29(3-4):265-77. doi: 10.1023/a:1025833814356.
7
Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex.种群基因组学揭示了强制孤雌生殖的大型溞的进化起源和命运。
Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15740-5. doi: 10.1073/pnas.1313388110. Epub 2013 Aug 19.
8
Genetic tests of ancient asexuality in root knot nematodes reveal recent hybrid origins.根结线虫古代无性生殖的基因测试揭示了其近期的杂交起源。
BMC Evol Biol. 2008 Jul 7;8:194. doi: 10.1186/1471-2148-8-194.
9
Molecular phylogeny of oribatid mites (Oribatida, Acari): evidence for multiple radiations of parthenogenetic lineages.甲螨(甲螨目,蜱螨亚纲)的分子系统发育:孤雌生殖谱系多次辐射的证据
Exp Appl Acarol. 2004;33(3):183-201. doi: 10.1023/b:appa.0000032956.60108.6d.
10
The ecological distribution of reproductive mode in oribatid mites, as related to biological complexity.甲螨生殖方式的生态分布,与生物复杂性的关系。
Exp Appl Acarol. 2006;40(1):1-25. doi: 10.1007/s10493-006-9016-3. Epub 2006 Aug 10.

本文引用的文献

1
NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes.NGenomeSyn:一个易于使用且灵活的工具,用于发布准备就绪的跨多个基因组的同线性关系可视化。
Bioinformatics. 2023 Mar 1;39(3). doi: 10.1093/bioinformatics/btad121.
2
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing.利用 RagTag 进行自动化组装支架,为高通量基因组编辑提升了一个新的番茄系统。
Genome Biol. 2022 Dec 15;23(1):258. doi: 10.1186/s13059-022-02823-7.
3
DNA repair during nonreductional meiosis in the asexual rotifer .
有性生殖生物减数分裂过程中 DNA 修复的研究进展。
Sci Adv. 2022 Dec 2;8(48):eadc8829. doi: 10.1126/sciadv.adc8829. Epub 2022 Nov 30.
4
TE Density: a tool to investigate the biology of transposable elements.转座元件密度:一种研究转座元件生物学特性的工具。
Mob DNA. 2022 Apr 12;13(1):11. doi: 10.1186/s13100-022-00264-4.
5
Visualization Tools for Genomic Conservation.基因组保护的可视化工具。
Methods Mol Biol. 2022;2443:285-308. doi: 10.1007/978-1-0716-2067-0_16.
6
The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates.突变马拉松强调了在基于家系的种系突变率估计中达到标准化的重要性。
Elife. 2022 Jan 12;11:e73577. doi: 10.7554/eLife.73577.
7
Haplotype divergence supports long-term asexuality in the oribatid mite .单体型分歧支持食木甲螨的长期无性繁殖。
Proc Natl Acad Sci U S A. 2021 Sep 21;118(38). doi: 10.1073/pnas.2101485118.
8
Transposable element annotation in non-model species: The benefits of species-specific repeat libraries using semi-automated EDTA and DeepTE de novo pipelines.非模式物种中的转座元件注释:使用半自动EDTA和DeepTE从头组装流程构建物种特异性重复序列文库的益处。
Mol Ecol Resour. 2022 Feb;22(2):823-833. doi: 10.1111/1755-0998.13489. Epub 2021 Sep 2.
9
Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms.克服非模式生物长读长组装中的未折叠单倍型。
BMC Bioinformatics. 2021 Jun 5;22(1):303. doi: 10.1186/s12859-021-04118-3.
10
Twelve years of SAMtools and BCFtools.SAMtools 和 BCFtools 十二年。
Gigascience. 2021 Feb 16;10(2). doi: 10.1093/gigascience/giab008.