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使用LASSO Cox回归对口腔鳞状细胞癌预后基因特征的叙述性综述

A Narrative Review of Prognostic Gene Signatures in Oral Squamous Cell Carcinoma Using LASSO Cox Regression.

作者信息

Mohd Faizal Nur Fatinazwa, Shai Saptarsi, Savaliya Bansi P, Karen-Ng Lee Peng, Kumari Rupa, Kumar Rahul, Vincent-Chong Vui King

机构信息

Oral Cancer Research & Coordinating Centre (OCRCC), Faculty of Dentistry, Universiti Malaya, Kuala Lumpur 50603, Malaysia.

Baylor College of Medicine, Texas Children's Hospital, Houston, TX 77030, USA.

出版信息

Biomedicines. 2025 Jan 8;13(1):134. doi: 10.3390/biomedicines13010134.

Abstract

Oral squamous cell carcinoma (OSCC) is one of the most common malignancies of the head and neck squamous cell carcinoma (HNSCC). HNSCC is recognized as the eighth most commonly occurring cancer globally in men. It is essential to distinguish between cancers arising in the head and neck regions due to significant differences in their etiologies, treatment approaches, and prognoses. As the Cancer Genome Atlas (TCGA) dataset is available in HNSCC, the survival analysis prognosis of OSCC patients based on the TCGA dataset for discovering gene expression-based prognostic biomarkers is limited. To address this paucity, we aimed to provide comprehensive evidence by recruiting studies that have reported new biomarkers/signatures to establish a prognostic model to predict the survival of OSCC patients. Using PubMed search, we have identified 34 studies that have been using the least absolute shrinkage and selection operator (LASSO)-based Cox regression analyses to establish signature prognosis that related to different pathways in OSCC from the past 4 years. Our review was focused on summarizing these signatures and implications for targeted therapy using FDA-approved drugs. Furthermore, we conducted an analysis of the LASSO Cox regression gene signatures. Our findings revealed 13 studies that correlated a greater number of regulatory T cells (Tregs) cells in protective gene signatures with increased recurrence-free and overall survival rates. Conversely, two studies displayed an opposing trend in cases of OSCC. We will also explore how the dysregulation of these signatures impacts immune status, promoting tumor immune evasion or, conversely, enhancing immune surveillance. Overall, this review will provide new insight for future anti-cancer therapies based on the potential gene that is associated with poor prognosis in OSCC.

摘要

口腔鳞状细胞癌(OSCC)是头颈部鳞状细胞癌(HNSCC)最常见的恶性肿瘤之一。HNSCC被认为是全球男性中第八大常见癌症。由于头颈部区域癌症在病因、治疗方法和预后方面存在显著差异,因此区分这些部位发生的癌症至关重要。由于HNSCC有癌症基因组图谱(TCGA)数据集,基于TCGA数据集对OSCC患者进行生存分析预后以发现基于基因表达的预后生物标志物的研究有限。为了解决这一不足,我们旨在通过招募报告了新生物标志物/特征的研究来提供全面证据,以建立一个预测OSCC患者生存的预后模型。通过PubMed搜索,我们确定了34项研究,这些研究在过去4年中使用基于最小绝对收缩和选择算子(LASSO)的Cox回归分析来建立与OSCC不同途径相关的特征预后。我们的综述重点是总结这些特征以及使用FDA批准药物进行靶向治疗的意义。此外,我们对LASSO Cox回归基因特征进行了分析。我们的研究结果显示,有13项研究表明,保护性基因特征中调节性T细胞(Tregs)数量较多与无复发生存率和总生存率增加相关。相反,有两项研究在OSCC病例中显示出相反的趋势。我们还将探讨这些特征的失调如何影响免疫状态,促进肿瘤免疫逃逸,或者相反,增强免疫监视。总体而言,本综述将基于与OSCC预后不良相关的潜在基因,为未来的抗癌治疗提供新的见解。

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