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A Narrative Review of Prognostic Gene Signatures in Oral Squamous Cell Carcinoma Using LASSO Cox Regression.

作者信息

Mohd Faizal Nur Fatinazwa, Shai Saptarsi, Savaliya Bansi P, Karen-Ng Lee Peng, Kumari Rupa, Kumar Rahul, Vincent-Chong Vui King

机构信息

Oral Cancer Research & Coordinating Centre (OCRCC), Faculty of Dentistry, Universiti Malaya, Kuala Lumpur 50603, Malaysia.

Baylor College of Medicine, Texas Children's Hospital, Houston, TX 77030, USA.

出版信息

Biomedicines. 2025 Jan 8;13(1):134. doi: 10.3390/biomedicines13010134.


DOI:10.3390/biomedicines13010134
PMID:39857718
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11759772/
Abstract

Oral squamous cell carcinoma (OSCC) is one of the most common malignancies of the head and neck squamous cell carcinoma (HNSCC). HNSCC is recognized as the eighth most commonly occurring cancer globally in men. It is essential to distinguish between cancers arising in the head and neck regions due to significant differences in their etiologies, treatment approaches, and prognoses. As the Cancer Genome Atlas (TCGA) dataset is available in HNSCC, the survival analysis prognosis of OSCC patients based on the TCGA dataset for discovering gene expression-based prognostic biomarkers is limited. To address this paucity, we aimed to provide comprehensive evidence by recruiting studies that have reported new biomarkers/signatures to establish a prognostic model to predict the survival of OSCC patients. Using PubMed search, we have identified 34 studies that have been using the least absolute shrinkage and selection operator (LASSO)-based Cox regression analyses to establish signature prognosis that related to different pathways in OSCC from the past 4 years. Our review was focused on summarizing these signatures and implications for targeted therapy using FDA-approved drugs. Furthermore, we conducted an analysis of the LASSO Cox regression gene signatures. Our findings revealed 13 studies that correlated a greater number of regulatory T cells (Tregs) cells in protective gene signatures with increased recurrence-free and overall survival rates. Conversely, two studies displayed an opposing trend in cases of OSCC. We will also explore how the dysregulation of these signatures impacts immune status, promoting tumor immune evasion or, conversely, enhancing immune surveillance. Overall, this review will provide new insight for future anti-cancer therapies based on the potential gene that is associated with poor prognosis in OSCC.

摘要

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[1]
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引用本文的文献

[1]
Therapeutic Targeting of Apoptosis, Autophagic Cell Death, Necroptosis, Pyroptosis, and Ferroptosis Pathways in Oral Squamous Cell Carcinoma: Molecular Mechanisms and Potential Strategies.

Biomedicines. 2025-7-16

[2]
Machine learning and transcriptomics in the research on biomarkers of chronic kidney disease: technical robustness, clinical feasibility and ethical standards.

Int Urol Nephrol. 2025-7-28

本文引用的文献

[1]
Cancer Stem Cells in Oral Squamous Cell Carcinoma: A Narrative Review on Experimental Characteristics and Methodological Challenges.

Biomedicines. 2024-9-16

[2]
Neuraminidase-1 (NEU1): Biological Roles and Therapeutic Relevance in Human Disease.

Curr Issues Mol Biol. 2024-7-26

[3]
Harnessing autophagy: A potential breakthrough in digestive disease treatment.

World J Gastroenterol. 2024-6-28

[4]
Development and validation of a novel disulfidptosis-related lncRNAs signature in patients with HPV-negative oral squamous cell carcinoma.

Sci Rep. 2024-6-23

[5]
Salivary Metabolites Produced by Oral Microbes in Oral Diseases and Oral Squamous Cell Carcinoma: A Review.

Metabolites. 2024-5-10

[6]
Prognostic Analysis of Lactic Acid Metabolism Genes in Oral Squamous Cell Carcinoma.

Int Dent J. 2024-10

[7]
Endoplasmic reticulum stress and therapeutic strategies in metabolic, neurodegenerative diseases and cancer.

Mol Med. 2024-3-20

[8]
Targeting cuproplasia and cuproptosis in cancer.

Nat Rev Clin Oncol. 2024-5

[9]
Prognostic model revealing pyroptosis-related signatures in oral squamous cell carcinoma based on bioinformatics analysis.

Sci Rep. 2024-3-14

[10]
Impact of oseltamivir on the risk of cancer.

Front Oncol. 2024-2-26

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