Amanatidou Dionysia, Eleftheriou Phaedra, Petrou Anthi, Geronikaki Athina, Lialiaris Theodoros
Department of Biomedical Sciences, School of Health, International Hellenic University, 57400 Thessaloniki, Greece.
Department of Pharmaceutical Chemistry, School of Pharmacy, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece.
Pharmaceuticals (Basel). 2025 Jan 4;18(1):52. doi: 10.3390/ph18010052.
DPP4 is an enzyme with multiple natural substrates and probable involvement in various mechanisms. It constitutes a drug target for the treatment of diabetes II, although, also related to other disorders. While a number of drugs with competitive inhibitory action and covalent binding capacity are available, undesired side effects exist partly attributed to drug kinetics, and research for finding novel, potent, and safer compounds continues. Despite the research, a low number of uncompetitive and non-competitive inhibitors, which could be of worth for pharmaceutical and mechanism studies, was mentioned. In the present study sixteen 3-(benzo[d]thiazol-2-yl)-2-aryl thiazolidin-4-ones were selected for evaluation, based on structural characteristics and docking analysis and were tested in vitro for DPP4 inhibitory action using H-Gly-Pro-amidomethyl coumarin substrate. Their mode of inhibition was also in vitro explored. Twelve compounds exhibited IC values at the nM range with the best showing IC = 12 ± 0.5 nM, better than sitagliptin. Most compounds exhibited a competitive mode of inhibition. Inhibition modes of uncompetitive, non-competitive, and mixed type were also identified. Docking analysis was in accordance with the in vitro results, with a linear correlation of logIC with a Probability of Binding Factor(PF) derived using docking analysis to a specific target box and to the whole enzyme. According to the docking results, two probable sites of binding for uncompetitive inhibitors were highlighted in the wider area of the active site and in the propeller loop. Potent inhibitors with IC at the nM range and competitive, non-competitive, uncompetitive, and mixed modes of action, one better than sitagliptin, were found. Docking analysis was used to estimate probable sites and ways of binding. However, crystallographic or NMR studies are needed to elucidate the exact way of binding especially for uncompetitive and non-competitive inhibitors.
二肽基肽酶4(DPP4)是一种具有多种天然底物且可能参与多种机制的酶。它是治疗2型糖尿病的药物靶点,不过也与其他疾病有关。虽然有许多具有竞争性抑制作用和共价结合能力的药物,但仍存在一些不良副作用,部分归因于药物动力学,因此寻找新型、高效且更安全化合物的研究仍在继续。尽管有相关研究,但提到的非竞争性和反竞争性抑制剂数量较少,而这些抑制剂对药物研发和作用机制研究可能具有重要价值。在本研究中,基于结构特征和对接分析,选择了16种3 -(苯并[d]噻唑 - 2 - 基)- 2 - 芳基噻唑烷 - 4 - 酮进行评估,并使用H - 甘氨酰 - 脯氨酰 - 氨基甲基香豆素底物在体外测试其对DPP4的抑制作用。还在体外探索了它们的抑制模式。12种化合物的半数抑制浓度(IC)值在纳摩尔范围内,其中表现最佳的IC = 12 ± 0.5 nM,优于西他列汀。大多数化合物表现出竞争性抑制模式。同时也鉴定出了反竞争性、非竞争性和混合型抑制模式。对接分析与体外实验结果一致,logIC与通过对接分析得出的结合因子概率(PF)之间存在线性相关性,该结合因子概率是针对特定目标框和整个酶而言的。根据对接结果,在活性位点的更广泛区域和螺旋桨环中突出显示了反竞争性抑制剂两个可能的结合位点。发现了IC值在纳摩尔范围内且具有竞争性、非竞争性、反竞争性和混合型作用模式的强效抑制剂,其中一种优于西他列汀。对接分析用于估计可能的结合位点和结合方式。然而,需要进行晶体学或核磁共振研究来阐明特别是反竞争性和非竞争性抑制剂的确切结合方式。