Giraldo-Ocampo Sebastian, Valiente-Echeverría Fernando, Soto-Rifo Ricardo
Laboratory of Molecular and Cellular Virology, Institute of Biomedical Sciences, Faculty of Medicine, Universidad de Chile, Santiago 8380453, Chile.
Center for HIV/AIDS Integral Research (CHAIR), Faculty of Medicine, Universidad de Chile, Santiago 8380453, Chile.
Viruses. 2024 Dec 31;17(1):43. doi: 10.3390/v17010043.
RNA-binding proteins (RBPs) are cellular factors involved in every step of RNA metabolism. During HIV-1 infection, these proteins are key players in the fine-tuning of viral and host cellular and molecular pathways, including (but not limited to) viral entry, transcription, splicing, RNA modification, translation, decay, assembly, and packaging, as well as the modulation of the antiviral response. Targeted studies have been of paramount importance in identifying and understanding the role of RNA-binding proteins that bind to HIV-1 RNAs. However, novel approaches aimed at identifying all the proteins bound to specific RNAs (RBPome), such as RNA interactome capture, have also contributed to expanding our understanding of the HIV-1 replication cycle, allowing the identification of RBPs with functions not only in viral RNA metabolism but also in cellular metabolism. Strikingly, several of the RBPs found through interactome capture are not canonical RBPs, meaning that they do not have conventional RNA-binding domains and are therefore not readily predicted as being RBPs. Further studies on the different cellular targets of HIV-1, such as subtypes of T cells or myeloid cells, or on the context (active replication versus reactivation from latency) are needed to fully elucidate the host RBPome bound to the viral RNA, which will allow researchers and clinicians to discover new therapeutic targets during active replication and provirus reactivation from latency.
RNA结合蛋白(RBPs)是参与RNA代谢各个步骤的细胞因子。在HIV-1感染过程中,这些蛋白在病毒及宿主细胞和分子途径的精细调控中起着关键作用,包括(但不限于)病毒进入、转录、剪接、RNA修饰、翻译、降解、组装和包装,以及对抗病毒反应的调节。针对性研究对于识别和理解与HIV-1 RNA结合的RNA结合蛋白的作用至关重要。然而,诸如RNA相互作用组捕获等旨在识别与特定RNA结合的所有蛋白(RBPome)的新方法,也有助于扩展我们对HIV-1复制周期的理解,从而能够识别不仅在病毒RNA代谢而且在细胞代谢中具有功能的RBPs。引人注目的是,通过相互作用组捕获发现的一些RBPs并非典型的RBPs,这意味着它们没有传统的RNA结合结构域,因此不容易被预测为RBPs。需要对HIV-1的不同细胞靶点,如T细胞或髓样细胞的亚型,或对其背景情况(活跃复制与潜伏激活)进行进一步研究,以全面阐明与病毒RNA结合的宿主RBPome,这将使研究人员和临床医生能够在活跃复制和潜伏病毒激活过程中发现新的治疗靶点。