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肾移植受者中BK病毒感染的建模

Modeling BK Virus Infection in Renal Transplant Recipients.

作者信息

Myers Nicholas, Droz Dana, Rogers Bruce W, Tran Hien, Flores Kevin B, Chan Cliburn, Knechtle Stuart J, Jackson Annette M, Luo Xunrong, Chambers Eileen T, McCarthy Janice M

机构信息

Center for Research in Scientific Computation, Department of Mathematics, North Carolina State University, Raleigh, NC 27695, USA.

Department of Surgery, Duke University, Durham, NC 27710, USA.

出版信息

Viruses. 2024 Dec 31;17(1):50. doi: 10.3390/v17010050.

DOI:10.3390/v17010050
PMID:39861837
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11768487/
Abstract

Kidney transplant recipients require a lifelong protocol of immunosuppressive therapy to prevent graft rejection. However, these same medications leave them susceptible to opportunistic infections. One pathogen of particular concern is human polyomavirus 1, also known as BK virus (BKPyV). This virus attacks kidney tubule epithelial cells and is a direct threat to the health of the graft. Current standard of care in BK virus-infected transplant recipients is reduction in immunosuppressant therapy, to allow the patient's immune system to control the virus. This requires a delicate balance; immune suppression must be strong enough to prevent rejection, yet weak enough to allow viral clearance. We seek to model viral and immune dynamics with the ultimate goal of applying optimal control methods to this problem. In this paper, we begin with a previously published model and make simplifying assumptions that reduce the number of parameters from 20 to 14. We calibrate our model using newly available patient data and a detailed sensitivity analysis. Numerical results for multiple patients are given to show that the newer model reflects observed dynamics well.

摘要

肾移植受者需要终身进行免疫抑制治疗方案,以防止移植排斥反应。然而,这些药物同样使他们易受机会性感染。一种特别值得关注的病原体是人类多瘤病毒1,也称为BK病毒(BKPyV)。这种病毒攻击肾小管上皮细胞,对移植器官的健康构成直接威胁。目前,BK病毒感染的移植受者的标准治疗方法是减少免疫抑制治疗,以使患者的免疫系统控制病毒。这需要微妙的平衡;免疫抑制必须足够强以防止排斥反应,但又要足够弱以允许病毒清除。我们试图对病毒和免疫动力学进行建模,最终目标是将最优控制方法应用于此问题。在本文中,我们从一个先前发表的模型开始,并做出简化假设,将参数数量从20个减少到14个。我们使用新获得的患者数据和详细的敏感性分析对模型进行校准。给出了多个患者的数值结果,以表明新模型能很好地反映观察到的动态。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/765c5dc4e919/viruses-17-00050-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/21a8e1a7c2a9/viruses-17-00050-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/8512765f3266/viruses-17-00050-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/d24aaf525282/viruses-17-00050-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/436bce84c1a2/viruses-17-00050-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/4984ad99374b/viruses-17-00050-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/99bd2ec7e5bb/viruses-17-00050-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/765c5dc4e919/viruses-17-00050-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/21a8e1a7c2a9/viruses-17-00050-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/8512765f3266/viruses-17-00050-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/d24aaf525282/viruses-17-00050-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/436bce84c1a2/viruses-17-00050-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/4984ad99374b/viruses-17-00050-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/99bd2ec7e5bb/viruses-17-00050-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81da/11768487/765c5dc4e919/viruses-17-00050-g007.jpg

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引用本文的文献

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本文引用的文献

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BK Virus Nephropathy in Kidney Transplantation: A State-of-the-Art Review.BK 病毒肾病在肾移植中的研究进展:一篇综述。
Viruses. 2022 Jul 25;14(8):1616. doi: 10.3390/v14081616.
2
BK Virus Infection and BK-Virus-Associated Nephropathy in Renal Transplant Recipients.肾移植受者中的 BK 病毒感染和 BK 病毒相关性肾病。
Genes (Basel). 2022 Jul 21;13(7):1290. doi: 10.3390/genes13071290.
3
Mathematical model for early functional recovery pattern of kidney transplant recipients using serum creatinine.使用血清肌酐评估肾移植受者早期功能恢复模式的数学模型
Korean J Transplant. 2020 Sep 30;34(3):167-177. doi: 10.4285/kjt.2020.34.3.167.
4
A flow cytometry-based proliferation assay for clinical evaluation of T-cell memory against SARS-CoV-2.一种基于流式细胞术的增殖检测方法,用于临床评估 T 细胞对 SARS-CoV-2 的记忆应答。
J Immunol Methods. 2021 Dec;499:113159. doi: 10.1016/j.jim.2021.113159. Epub 2021 Sep 28.
5
A case for the reuse and adaptation of mechanistic computational models to study transplant immunology.一个关于重复利用和改编机制计算模型来研究移植免疫学的案例。
Am J Transplant. 2020 Feb;20(2):355-361. doi: 10.1111/ajt.15623. Epub 2019 Oct 23.
6
BK Polyomavirus Virus Glomerular Tropism: Implications for Virus Reactivation from Latency and Amplification during Immunosuppression.BK多瘤病毒的肾小球嗜性:对免疫抑制期间病毒潜伏激活和增殖的影响
J Clin Med. 2019 Sep 17;8(9):1477. doi: 10.3390/jcm8091477.
7
Machine learning in predicting graft failure following kidney transplantation: A systematic review of published predictive models.机器学习在预测肾移植后移植物失败中的应用:已发表预测模型的系统评价。
Int J Med Inform. 2019 Oct;130:103957. doi: 10.1016/j.ijmedinf.2019.103957. Epub 2019 Aug 24.
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The First Asian Kidney Transplantation Prediction Models for Long-term Patient and Allograft Survival.首个适用于亚洲人群的预测长期患者和移植物生存的肾移植模型。
Transplantation. 2020 May;104(5):1048-1057. doi: 10.1097/TP.0000000000002918.
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Patient Survival After Kidney Transplantation: Important Role of Graft-sustaining Factors as Determined by Predictive Modeling Using Random Survival Forest Analysis.肾移植患者的生存情况:使用随机生存森林分析进行预测建模确定的维持移植物因素的重要作用。
Transplantation. 2020 May;104(5):1095-1107. doi: 10.1097/TP.0000000000002922.
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BK polyomavirus in solid organ transplantation-Guidelines from the American Society of Transplantation Infectious Diseases Community of Practice.BK 多瘤病毒在实体器官移植中的作用——美国移植感染病学会实践社区指南。
Clin Transplant. 2019 Sep;33(9):e13528. doi: 10.1111/ctr.13528. Epub 2019 Apr 10.