Sabbarini Ibrahim M, Reif Dvir, Park Kibum, McQuown Alexander J, Nelliat Anjali R, Trejtnar Charlotte, Dötsch Volker, Shakhnovich Eugene I, Murray Andrew W, Denic Vladimir
Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA.
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
Nat Commun. 2025 Feb 3;16(1):1277. doi: 10.1038/s41467-025-56489-3.
Eukaryotic translation elongation factor 1A (eEF1A) is a highly abundant, multi-domain GTPase. Post-translational steps essential for eEF1A biogenesis are carried out by bespoke chaperones but co-translational mechanisms tailored to eEF1A folding remain unexplored. Here, we use AlphaPulldown to identify Ypl225w (also known as Chp1, Chaperone 1 for eEF1A) as a conserved yeast protein predicted to stabilize the N-terminal, GTP-binding (G) domain of eEF1A against its misfolding propensity, as predicted by computational simulations and validated by microscopy analysis of ypl225wΔ cells. Proteomics and biochemical reconstitution reveal that Ypl225w functions as a co-translational chaperone by forming dual interactions with the eEF1A G domain nascent chain and the UBA domain of ribosome-bound nascent polypeptide-associated complex (NAC). Lastly, we show that Ypl225w primes eEF1A nascent chains for binding to GTP as part of a folding mechanism tightly coupled to chaperone recycling. Our work shows that an ATP-independent chaperone can drive vectorial folding of nascent chains by co-opting G protein nucleotide binding.
真核生物翻译延伸因子1A(eEF1A)是一种高度丰富的多结构域GTP酶。eEF1A生物合成所必需的翻译后步骤由特定的伴侣蛋白执行,但针对eEF1A折叠的共翻译机制仍未被探索。在这里,我们使用AlphaPulldown技术鉴定出Ypl225w(也称为Chp1,即eEF1A的伴侣蛋白1)是一种保守的酵母蛋白,通过计算模拟预测并经ypl225wΔ细胞的显微镜分析验证,该蛋白可稳定eEF1A的N端GTP结合(G)结构域,防止其错误折叠倾向。蛋白质组学和生化重建表明,Ypl225w通过与eEF1A G结构域新生链和核糖体结合的新生多肽相关复合物(NAC)的UBA结构域形成双重相互作用,发挥共翻译伴侣蛋白的功能。最后,我们表明,作为与伴侣蛋白循环紧密耦合的折叠机制的一部分,Ypl225w使eEF1A新生链能够结合GTP。我们的工作表明,一种不依赖ATP的伴侣蛋白可以通过利用G蛋白核苷酸结合来驱动新生链的定向折叠。