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2-{4-[()-(4-乙酰苯基)重氮基]苯基}-1-(5-溴噻吩-2-基)乙酮的晶体结构、 Hirshfeld表面、密度泛函理论及分子对接研究;一种具有溴⋯氧型接触的化合物

Crystal structure, Hirshfeld surface, DFT and mol-ecular docking studies of 2-{4-[()-(4-acetylphen-yl)diazen-yl]phen-yl}-1-(5-bromo-thio-phen-2-yl)ethanone; a compound with bromine⋯oxygen-type contacts.

作者信息

Santhosh Kumar S, Srinivasa H T, Harish Kumar M, Devarajegowda H C, Palakshamurthy B S

机构信息

Department of PG Studies and Research in Physics Albert Einstein Block UCS Tumkur University, Tumkur Karnataka-572103 India.

Raman Research Institute, C V Raman Avenue Sadashivanagar Bangalore Karnataka India.

出版信息

Acta Crystallogr E Crystallogr Commun. 2024 Nov 22;80(Pt 12):1308-1312. doi: 10.1107/S2056989024010776. eCollection 2024 Nov 1.

Abstract

The title compound, CHBrNOS, a non-liquid crystal mol-ecule, crystallizes in the ortho-rhom-bic system, space group 2. The torsion angles associated with ester and azo groups are -177.0 (4)°, -anti-periplanar, and 179.0 (4)°, +anti-periplanar, respectively. The packing is consolidated by a weak C-Br⋯O=C contact, forming infinite chains running along the [001] direction. A Hirshfeld surface analysis revealed that the major contributions to the crystal surface are from H⋯H, C⋯H/H⋯C, O⋯H/H⋯O, Br⋯H/H⋯Br and S⋯H/H⋯S inter-actions. The computed three-dimensional energy inter-actions using the basis set B3LYP\631-G(d,p) show that (217.6 kJ mol) is the major component in the structure. The DFT calculations performed at the B3LYP/6-311+ G(d,p) level indicate that the energy gap between HOMO and LUMO is 3.6725 (2) eV. The mol-ecular electrostatic potential (MEP) map generated supports the existence of the Br⋯O type contact, formed between the electrophilic site of the bromine atom and the nucleophilic site of the ketonic oxygen atom. The mol-ecular docking between the ligand and the (PDB ID:1HZP) receptor shows a good binding affinity value of -8.5 kcal mol.

摘要

标题化合物CHBrNOS,一种非液晶分子,结晶于正交晶系,空间群为P212121。与酯基和偶氮基相关的扭转角分别为-177.0 (4)°(反式-邻位平面)和179.0 (4)°(顺式-邻位平面)。堆积通过弱的C-Br⋯O=C接触得以巩固,形成沿[001]方向延伸的无限链。 Hirshfeld表面分析表明,对晶体表面的主要贡献来自H⋯H、C⋯H/H⋯C、O⋯H/H⋯O、Br⋯H/H⋯Br和S⋯H/H⋯S相互作用。使用基组B3LYP\6-31G(d,p)计算的三维能量相互作用表明,(217.6 kJ mol)是结构中的主要成分。在B3LYP/6-311+G(d,p)水平上进行的DFT计算表明,最高占据分子轨道(HOMO)和最低未占据分子轨道(LUMO)之间的能隙为3.6725 (2) eV。生成的分子静电势(MEP)图支持了溴原子的亲电位点与酮式氧原子的亲核位点之间形成的Br⋯O型接触的存在。配体与(PDB ID:1HZP)受体之间分子对接显示出良好的结合亲和力值为-8.5 kcal mol。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a900/11789173/5c54956a7633/e-80-01308-fig1.jpg

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