Miyamoto Naoki, Hayashi Kentaro, Ogata Naohisa, Yamada Naoyuki, Tsuge Kenji
Synplogen Co., Ltd., Kobe, Hyogo 6500047, Japan.
ACS Synth Biol. 2025 Feb 21;14(2):629-633. doi: 10.1021/acssynbio.4c00734. Epub 2025 Feb 5.
natorial rdered ene ssembly in (Combi-OGAB) enables construction of combinatorial libraries of various genetic elements, such as promoters in a biosynthetic gene cluster (BGC), and screening of highly productive combinations from the library. The combinations are limited by the library design, and the selectable productivity is defined within the combination. To refine the selected BGC using conventional Combi-OGAB with expanded diversity, we devised a directed evolutionary method called as andom utagenesis with (Combi-OGAB), which includes random mutagenesis by error-prone PCR and Combi-OGAB. In the present study, Gramicidin S (GS)-producing plasmids were used to examine the utility of Combi-OGAB. GS plasmids, originally generated using conventional Combi-OGAB, were successfully evolved using Combi-OGAB. carrying the evolved plasmid with unpredictable mutations showed a 1.5-fold improvement in the GS productivity. We thus expect that Combi-OGAB can be applied to various BGCs for useful products, such as antibiotics, to improve their productivity.
组合有序基因组装法(Combi-OGAB)能够构建各种遗传元件的组合文库,如生物合成基因簇(BGC)中的启动子,并从文库中筛选出高产组合。组合受到文库设计的限制,并且在组合中定义了可选择的生产力。为了使用具有扩展多样性的传统Combi-OGAB来优化选定的BGC,我们设计了一种称为随机诱变Combi-OGAB的定向进化方法,该方法包括易错PCR的随机诱变和Combi-OGAB。在本研究中,使用产生短杆菌肽S(GS)的质粒来检验Combi-OGAB的效用。最初使用传统Combi-OGAB产生的GS质粒通过Combi-OGAB成功进化。携带具有不可预测突变的进化质粒的菌株在GS生产力方面提高了1.5倍。因此,我们期望Combi-OGAB可以应用于各种产生有用产物(如抗生素)的BGC,以提高它们的生产力。