Suppr超能文献

长白猪生长、体组成和繁殖性状的跨代表观遗传遗传性

Transgenerational epigenetic heritability for growth, body composition, and reproductive traits in Landrace pigs.

作者信息

Araujo Andre C, Johnson Jay S, Graham Jason R, Howard Jeremy, Huang Yijian, Oliveira Hinayah R, Brito Luiz F

机构信息

Department of Animal Sciences, Purdue University, West Lafayette, IN, United States.

Livestock Behavior Research Unity, USDA-ARS, West Lafayette, IN, United States.

出版信息

Front Genet. 2025 Jan 23;15:1526473. doi: 10.3389/fgene.2024.1526473. eCollection 2024.

Abstract

Epigenetics is an important source of variation in complex traits that is not due to changes in DNA sequences, and is dependent on the environment the individuals are exposed to. Therefore, we aimed to estimate transgenerational epigenetic heritability, percentage of resetting epigenetic marks, genetic parameters, and predicting breeding values using genetic and epigenetic models for growth, body composition, and reproductive traits in Landrace pigs using routinely recorded datasets. Birth and weaning weight, backfat thickness, total number of piglets born, and number of piglets born alive (BW, WW, BF, TNB, and NBA, respectively) were investigated. Models including epigenetic effects had a similar or better fit than solely genetic models. Including genomic information in epigenetic models resulted in large changes in the variance component estimates. Transgenerational epigenetic heritability estimates ranged between 0.042 (NBA) to 0.336 (BF). The reset coefficient estimates for epigenetic marks were between 80% and 90%. Heritability estimates for the direct additive and maternal genetic effects ranged between 0.040 (BW) to 0.502 (BF) and 0.034 (BF) to 0.134 (BW), respectively. Repeatability of the reproductive traits ranged between 0.098 (NBA) to 0.148 (TNB). Prediction accuracies, bias, and dispersion of breeding values ranged between 0.199 (BW) to 0.443 (BF), -0.080 (WW) to 0.034 (NBA), and -0.134 (WW) to 0.131 (TNB), respectively, with no substantial differences between genetic and epigenetic models. Transgenerational epigenetic heritability estimates are moderate for growth and body composition and low for reproductive traits in North American Landrace pigs. Fitting epigenetic effects in genetic models did not impact the prediction of breeding values.

摘要

表观遗传学是复杂性状变异的一个重要来源,它并非由DNA序列变化引起,而是取决于个体所接触的环境。因此,我们旨在利用长白猪生长、体组成和繁殖性状的常规记录数据集,通过遗传和表观遗传模型来估计跨代表观遗传遗传力、表观遗传标记重置百分比、遗传参数以及预测育种值。研究了出生重、断奶重、背膘厚、产仔总数和活产仔数(分别为BW、WW、BF、TNB和NBA)。包含表观遗传效应的模型比仅包含遗传效应的模型拟合度相似或更好。在表观遗传模型中纳入基因组信息导致方差成分估计值发生较大变化。跨代表观遗传遗传力估计值在0.042(NBA)至0.336(BF)之间。表观遗传标记的重置系数估计值在80%至90%之间。直接加性遗传效应和母体遗传效应的遗传力估计值分别在0.040(BW)至0.502(BF)和0.034(BF)至0.134(BW)之间。繁殖性状的重复性在0.098(NBA)至0.148(TNB)之间。育种值的预测准确性、偏差和离散度分别在0.199(BW)至0.443(BF)、-0.080(WW)至0.034(NBA)和-0.134(WW)至0.131(TNB)之间,遗传模型和表观遗传模型之间没有实质性差异。在北美长白猪中,跨代表观遗传遗传力对生长和体组成而言中等,对繁殖性状而言较低。在遗传模型中纳入表观遗传效应不会影响育种值的预测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62cb/11799271/41b76fa266fb/fgene-15-1526473-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验