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三种人类DExD/H盒RNA解旋酶的动力学特性分析

Kinetic characterization of three human DExD/H-box RNA helicases.

作者信息

Li Fengling, Chan U Hang, Perez Julia Garcia, Zeng Hong, Chau Irene, Li Yanjun, Seitova Alma, Halabelian Levon

机构信息

Structural Genomics Consortium, University of Toronto, Toronto, Ontario M5G 1L7, Canada.

Department of Pharmacology and Toxicology, University of Toronto, Toronto, Ontario M5S 1A8, Canada.

出版信息

bioRxiv. 2025 Feb 7:2025.02.07.637080. doi: 10.1101/2025.02.07.637080.

Abstract

Human DExD/H-box RNA helicases are ubiquitous molecular motors that unwind and rearrange RNA secondary structures in an ATP-dependent manner. These enzymes play essential roles in nearly all aspects of RNA metabolism. While their biological functions are well-characterized, the kinetic mechanisms remain relatively understudied . In this study, we describe the development and optimization of a bioluminescence-based assay to kinetically characterize three human RNA helicases: MDA5, LGP2, and DDX1. The assays were conducted using annealed 24-mer RNA (blunt-ended double-stranded RNA) or double-stranded RNA (ds-RNA) with a 25-nt 3' overhang. These findings establish a robust and high-throughput assay suitable for a 384-well format, enabling the discovery and characterization of inhibitors targeting MDA5, LGP2, and DDX1. This work provides a valuable resource for advancing our understanding of these helicases and their therapeutic potential in Alzheimer's disease.

摘要

人类DExD/H-box RNA解旋酶是普遍存在的分子马达,它们以ATP依赖的方式解开并重新排列RNA二级结构。这些酶在RNA代谢的几乎所有方面都发挥着重要作用。虽然它们的生物学功能已得到充分表征,但其动力学机制仍相对未被深入研究。在本研究中,我们描述了一种基于生物发光的检测方法的开发和优化,以对三种人类RNA解旋酶:MDA5、LGP2和DDX1进行动力学表征。检测使用退火的24聚体RNA(平头双链RNA)或带有25个核苷酸3'突出端的双链RNA(ds-RNA)进行。这些发现建立了一种适用于384孔板形式的强大且高通量的检测方法,能够发现和表征靶向MDA5、LGP2和DDX1的抑制剂。这项工作为增进我们对这些解旋酶的理解及其在阿尔茨海默病中的治疗潜力提供了宝贵资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1ac/11839018/612f91f2728e/nihpp-2025.02.07.637080v1-f0001.jpg

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