Khranovska N, Gorbach O, Skachkova O, Klimnyuk G
Nonprofit organization "National Cancer Institute", Kyiv, Ukraine.
Exp Oncol. 2025 Feb 20;46(4):295-304. doi: 10.15407/exp-oncology.2024.04.295.
All cancers are diseases of the genome, since the cancer cell genome typically consists of 10,000s of passenger alterations, 5-10 biologically relevant alterations, and 1-2 "actionable" alterations. Therefore, somatic mutations in cancer cells can have diagnostic, prognostic, and predictive value. Traditional methods are widely used for testing, such as immunohistochemistry, Sanger sequencing, and allele-specific PCR. However, due to the low throughput, these methods are focused exclusively on testing the most common mutations in target genes. The modern next generation sequencing (NGS) is a technology that enables precision oncology in its current form. ESCAT and ESMO Guidelines defined NGS for routine use in patients with advanced cancers such as non-squamous non-small cell lung cancer, prostate cancer, ovarian cancer, and cholangiocarcinoma. The high sensitivity of the NGS method allows it to be used to search for specific mutations in circulating tumor DNA in blood plasma and other body fluids. NGS testing has evolved from hotspot panels, actionable gene panels, and disease-specific panels to more comprehensive panels. The exome and whole genome sequencing approaches are just beginning to emerge, that is why panel-based testing remains most optimal in oncology practice. NGS is also widely used to identify new and rare mutations in cancer genes and detect inherited cancer mutations.
所有癌症都是基因组疾病,因为癌细胞基因组通常包含数以万计的乘客性改变、5至10个生物学相关改变以及1至2个“可操作”改变。因此,癌细胞中的体细胞突变具有诊断、预后和预测价值。传统方法被广泛用于检测,如免疫组织化学、桑格测序和等位基因特异性PCR。然而,由于通量低,这些方法仅专注于检测靶基因中最常见的突变。现代的下一代测序(NGS)技术使精准肿瘤学成为可能。ESCAT和ESMO指南将NGS定义为用于晚期癌症患者(如非鳞状非小细胞肺癌、前列腺癌、卵巢癌和胆管癌)的常规检测方法。NGS方法的高灵敏度使其可用于在血浆和其他体液中的循环肿瘤DNA中寻找特定突变。NGS检测已从热点基因 panel、可操作基因panel和疾病特异性panel发展到更全面的panel。外显子组和全基因组测序方法刚刚开始出现,这就是为什么基于panel的检测在肿瘤学实践中仍然是最优化的。NGS还广泛用于识别癌症基因中的新突变和罕见突变以及检测遗传性癌症突变。