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与柄曲霉素类生物合成相关的黄素依赖性单加氧酶和氧化酶的结构与作用机制表征

Structural and Mechanistic Characterization of the Flavin-Dependent Monooxygenase and Oxidase Involved in Sorbicillinoid Biosynthesis.

作者信息

Tjallinks Gwen, Angeleri Nicolò, Nguyen Quoc-Thai, Mannucci Barbara, Arentshorst Mark, Visser Jaap, Ram Arthur F J, Fraaije Marco W, Mattevi Andrea

机构信息

Department of Biology and Biotechnology, University of Pavia, Via Adolfo Ferrata 9, Pavia 27100, Italy.

Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 3, Groningen 9747 AG, The Netherlands.

出版信息

ACS Chem Biol. 2025 Mar 21;20(3):646-655. doi: 10.1021/acschembio.4c00783. Epub 2025 Mar 7.

Abstract

Sorbicillinoids are yellow secondary metabolites synthesized through an elegant combination of enzymatic and spontaneous biochemical processes. The flavin-dependent monooxygenase SorC and oxidase SorD are crucial in this interplay, enabling the generation of a diverse array of functionally complex sorbicillinoids. By solving the crystal structures of SorC and SorD from with sorbicillin bound in the active site, we describe the catalytically active binding conformations, crucial for attaining enantioselective and stereoselective control in these enzymatic reactions. The structure of SorC was resolved with the cofactor FAD in its state, which allowed us to identify key residues that modulate flavin mobility and other conformational changes. Catalytic residues of SorC were also confirmed by detailed characterization of wild-type and several SorC variants. Meanwhile, using a CRISPR/Cas9-based multicopy-genome integration system, we could heterologously express the flavin-dependent oxidase SorD from in with high yields and purity. This allowed us to obtain the crystal structure of SorD with sorbicillin bound in a viable catalytic conformation. Structural analysis of the obtained complex provided insights into the substrate binding pose and highlighted potentially critical active site residues. Ultimately, having both SorC and SorD at our disposal enabled us to investigate their functions and interplays in the biosynthesis of a vast array of functionally complex sorbicillinoids.

摘要

柄曲霉素类是通过酶促和自发生化过程的精妙组合合成的黄色次生代谢产物。黄素依赖性单加氧酶SorC和氧化酶SorD在这种相互作用中至关重要,能够产生多种功能复杂的柄曲霉素类。通过解析来自[具体来源]的SorC和SorD与结合在活性位点的柄曲霉素的晶体结构,我们描述了催化活性结合构象,这对于在这些酶促反应中实现对映选择性和立体选择性控制至关重要。SorC的结构是在辅因子FAD处于[具体状态]时解析的,这使我们能够鉴定调节黄素流动性和其他构象变化的关键残基。野生型和几种SorC变体的详细表征也证实了SorC的催化残基。同时,使用基于CRISPR/Cas9的多拷贝基因组整合系统,我们能够以高产量和纯度在[具体宿主]中异源表达来自[具体来源]的黄素依赖性氧化酶SorD。这使我们能够获得结合有柄曲霉素的SorD的晶体结构,其处于可行的催化构象。对所得复合物的结构分析提供了对底物结合姿势的见解,并突出了潜在关键的活性位点残基。最终,我们能够同时使用SorC和SorD来研究它们在大量功能复杂的柄曲霉素类生物合成中的功能和相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b65/11934079/c1ecc178a160/cb4c00783_0007.jpg

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