Singh Alankrita, Malhotra Lakshay, Mishra Abhay, Kundral Simran, Tiwari Pawan Kumar, Kumar Saroj, Gururao Hariprasad, Kaur Punit, Ethayathulla Abdul Samath
Department of Biophysics, All India Institute of Medical Sciences, New Delhi, 110029, India.
Department of Biophysics, All India Institute of Medical Sciences, New Delhi, 110029, India; Department of Biochemistry, Sri Venkateswara College, University of Delhi, New Delhi, 110021, India.
Arch Biochem Biophys. 2025 Jun;768:110381. doi: 10.1016/j.abb.2025.110381. Epub 2025 Mar 8.
The homotetrameric form of p53 is critical for performing essential functions like maintaining genomic stability and preventing uncontrolled cell proliferation. In part, these crucial functions are mediated by the p53 C-terminal region (CTR) containing the tetramerization/oligomerization domain (TD/OD) and regulatory domain (RD), responsible for maintaining the protein's oligomeric state and regulating its function. Mutations in the tetramerization domain reduce the transactivation potential and alter the transactivation specificity of p53. This study investigates the effect of high-frequency tetramerization missense mutation p53R337C on protein stability, oligomeric state, and its ability to bind the DNA response elements. For the first time using CD and FTIR spectroscopy, we have shown that the p53 regulatory domain (residues 363-393) and oligomerization domain (residues 327-355) possess a characteristic alpha helix secondary structure, which is enhanced upon binding to DNA, implicating stabilization of the domain. The mutation R337C in the OD impacts the secondary and tertiary structure of p53 CTR, leading to the loss of secondary structure and the formation of unstable tetramers, as shown by CD and DSC thermal studies. Surprisingly, the secondary structure of mutant p53 CTR partially stabilized upon binding to the DNA sequence. Our data suggests that the unstable p53R337C tetramer exhibits weaker binding to the DNA promoter sequence with decreased transcription activity, consistent with previous cell-based assays. Our study conclude that the loss of salt-bridge interactions between Arg337 and Asp352 in the intra-dimer of p53 leads to the formation of unstable tetramers, and the DNA-binding ability of the regulatory domain.
p53的同源四聚体形式对于执行维持基因组稳定性和防止细胞不受控制地增殖等基本功能至关重要。这些关键功能部分由包含四聚化/寡聚化结构域(TD/OD)和调节结构域(RD)的p53 C末端区域(CTR)介导,该区域负责维持蛋白质的寡聚状态并调节其功能。四聚化结构域中的突变会降低p53的反式激活潜力并改变其反式激活特异性。本研究调查了高频四聚化错义突变p53R337C对蛋白质稳定性、寡聚状态及其结合DNA反应元件能力的影响。我们首次使用圆二色光谱(CD)和傅里叶变换红外光谱(FTIR)表明,p53调节结构域(第363 - 393位氨基酸残基)和寡聚化结构域(第327 - 355位氨基酸残基)具有特征性的α螺旋二级结构,在与DNA结合时这种结构会增强,这意味着该结构域得到了稳定。寡聚化结构域中的R337C突变影响了p53 CTR的二级和三级结构,导致二级结构丧失并形成不稳定的四聚体,如CD和差示扫描量热法(DSC)热研究所示。令人惊讶的是,突变型p53 CTR的二级结构在与DNA序列结合后部分得到稳定。我们的数据表明,不稳定的p53R337C四聚体与DNA启动子序列的结合较弱,转录活性降低,这与之前基于细胞的实验结果一致。我们的研究得出结论,p53二聚体内Arg337和Asp352之间盐桥相互作用的丧失导致形成不稳定的四聚体,以及调节结构域的DNA结合能力丧失。