用于精确检测循环微小RNA的磁珠上的SplintR连接触发滚环扩增
SplintR ligation-triggered rolling circle amplification on magnetic bead for accurate detection of circulating microRNAs.
作者信息
Yang Sha, Yuan Lijia, Luo Xing, Xiao Ting, Sun Xiaoqing, Feng Liu, Deng Jiezhong, Zhan Mei
机构信息
Department of Clinical Laboratory Medicine, Southwest Hospital, The Third Military Medical University, Shapingba District, Chongqing, China.
Shigatse Branch, Xinqiao Hospital, The Third Military Medical University, Shigatse, Xizang Province, China.
出版信息
PeerJ. 2025 Mar 11;13:e19082. doi: 10.7717/peerj.19082. eCollection 2025.
The circulating microRNAs (miRNAs), endogenous noncoding RNAs, post-transcriptionally participate in multiple processes during cell growth and development. Moreover, dysregulation of miRNAs expression is intricately associated with cancer. Currently, challenges of high homology, sequence similarity, and low abundance encountered in the detection of target miRNAs in complex samples need to be addressed. Biosensors established for miRNAs detection suffer from limitations in terms of sensitivity, specificity and high cost. Herein, a miRNA detection method based on RCA on magnetic bead catalyzed by SplintR ligase was proposed to achieve high sensitivity and high specificity. The following steps are included: (1) formation of P1-P2-miRNA double-stranded complex under catalyzation of SplintR ligase, and the release of P1-P2 single strand under denaturation; (2) enrichment of P1-P2 single chain by streptavidin-modified magnetic beads (SM-MB); (3) RCA on surface of magnetic beads; (4) fluorescence detection. After optimization of experimental conditions, miRNA-155 detection with improved sensitivity and specificity was achieved. The detection limit was low to 36.39 fM, and one-base mismatch discrimination was demonstrated. Also, the clinical practicability for circulating miRNA-155 detection was preliminarily validated in human serum samples.
循环微RNA(miRNA)是内源性非编码RNA,在细胞生长和发育过程中通过转录后水平参与多个过程。此外,miRNA表达失调与癌症密切相关。目前,在复杂样本中检测目标miRNA时遇到的高同源性、序列相似性和低丰度等挑战需要解决。用于miRNA检测的生物传感器在灵敏度、特异性和高成本方面存在局限性。在此,提出了一种基于SplintR连接酶催化磁珠上滚环扩增(RCA)的miRNA检测方法,以实现高灵敏度和高特异性。具体步骤如下:(1)在SplintR连接酶催化下形成P1-P2-miRNA双链复合物,并在变性条件下释放P1-P2单链;(2)用链霉亲和素修饰的磁珠(SM-MB)富集P1-P2单链;(3)在磁珠表面进行RCA;(4)荧光检测。经过实验条件优化,实现了对miRNA-155的检测,灵敏度和特异性均有所提高。检测限低至36.39 fM,并证明了对单碱基错配的区分能力。此外,还在人血清样本中初步验证了该方法用于循环miRNA-155检测的临床实用性。