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FOXM1表达通过抑制衰老相关的先锋因子AP-1来逆转衰老染色质图谱。

FOXM1 expression reverts aging chromatin profiles through repression of the senescence-associated pioneer factor AP-1.

作者信息

Ferreira Fábio J, Galhardo Mafalda, Nogueira João M, Teixeira Joana, Logarinho Elsa, Bessa José

机构信息

i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, 4200-135, Porto, Portugal.

Vertebrate Development and Regeneration Group, IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, 4200-135, Porto, Portugal.

出版信息

Nat Commun. 2025 Mar 25;16(1):2931. doi: 10.1038/s41467-025-57503-4.

DOI:10.1038/s41467-025-57503-4
PMID:40133272
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11937471/
Abstract

Aging is characterized by changes in gene expression, some of which can drive deleterious cellular phenotypes and senescence. The transcriptional activation of senescence genes has been mainly attributed to epigenetic shifts, but the changes in chromatin accessibility and its underlying mechanisms remain largely elusive in natural aging. Here, we profiled chromatin accessibility in human dermal fibroblasts (HDFs) from individuals with ages ranging from neonatal to octogenarian. We found that AP-1 binding motifs are prevalent in elderly-specific accessible chromatin regions while neonatal-specific regions are highly enriched for TEAD binding motifs. We further show that TEAD4 and FOXM1 share a conserved transcriptional regulatory landscape controlled by a not previously described and age-dependent enhancer that loses accessibility with aging and whose deletion drives senescence. Finally, we demonstrate that FOXM1 ectopic expression in elderly cells partially resets chromatin accessibility to a youthful state due to FOXM1's repressive function on several members of the AP-1 complex, which is known to trigger the senescence transcriptional program. These results place FOXM1 at a top hierarchical level in chromatin remodeling required to prevent senescence.

摘要

衰老的特征是基因表达的变化,其中一些变化会驱动有害的细胞表型和衰老。衰老基因的转录激活主要归因于表观遗传变化,但在自然衰老过程中,染色质可及性的变化及其潜在机制在很大程度上仍不清楚。在这里,我们分析了从新生儿到八旬老人的人类皮肤成纤维细胞(HDFs)中的染色质可及性。我们发现,AP-1结合基序在老年人特有的可及染色质区域中普遍存在,而新生儿特有的区域则高度富集TEAD结合基序。我们进一步表明,TEAD4和FOXM1共享一个保守的转录调控格局,该格局由一个以前未描述的、与年龄相关的增强子控制,该增强子随着衰老而失去可及性,其缺失会驱动衰老。最后,我们证明,由于FOXM1对AP-1复合体的几个成员具有抑制功能,老年细胞中FOXM1的异位表达部分地将染色质可及性重置为年轻状态,已知AP-1复合体可触发衰老转录程序。这些结果表明FOXM1在防止衰老所需的染色质重塑中处于顶级层次。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f7/11937471/f366cabff21d/41467_2025_57503_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f7/11937471/4462a3500a8f/41467_2025_57503_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f7/11937471/e4b6198d71ad/41467_2025_57503_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f7/11937471/d785147f34cb/41467_2025_57503_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f7/11937471/f366cabff21d/41467_2025_57503_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f7/11937471/4462a3500a8f/41467_2025_57503_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f7/11937471/e4b6198d71ad/41467_2025_57503_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f7/11937471/d785147f34cb/41467_2025_57503_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26f7/11937471/f366cabff21d/41467_2025_57503_Fig4_HTML.jpg

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本文引用的文献

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Nonlinear dynamics of multi-omics profiles during human aging.人类衰老过程中多组学特征的非线性动力学。
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Progressive senescence programs induce intrinsic vulnerability to aging-related female breast cancer.
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Tead4 and Tfap2c generate bipotency and a bistable switch in totipotent embryos to promote robust lineage diversification.Tead4 和 Tfap2c 在全能胚胎中产生双能性和双稳态开关,以促进强大的谱系多样化。
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ATAC-clock: An aging clock based on chromatin accessibility.ATAC-clock:基于染色质可及性的衰老时钟。
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RHINO directs MMEJ to repair DNA breaks in mitosis.RHINO 指导 MMEJ 修复有丝分裂中的 DNA 断裂。
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