Fang Qinghua, Fan Hongdan, Li Qiaoqiao, Zhang Muzi, Zhou Zhengzhong, Du Jianlin, Huang Jing
Department of Cardiology The Second Affiliated Hospital of Chongqing Medical University Chongqing China.
Department of Hepatobiliary Surgery The Second Affiliated Hospital of Chongqing Medical University Chongqing China.
J Am Heart Assoc. 2025 Apr;14(7):e037203. doi: 10.1161/JAHA.124.037203. Epub 2025 Mar 26.
Genome-wide association studies have revealed numerous loci associated with coronary artery disease (CAD). However, some potential causal/risk genes remain unidentified, and causal therapies are lacking.
We integrated multi-omics data from gene methylation, expression, and protein levels using summary data-based Mendelian randomization and colocalization analysis. Candidate genes were prioritized based on protein-level associations, colocalization probability, and links to methylation and expression. Single-cell RNA sequencing data were used to assess differential expression in the coronary arteries of patients with CAD. (), (), and () were identified as the genes most strongly associated with CAD, with exhibiting the most significant association. Higher methylation levels of at specific Cytosine-phosphate-Guanine sites were negatively correlated with its gene expression and associated with a lower risk of CAD, whereas higher circulating TAGLN2 protein levels were positively associated with CAD risk (odds ratio,1.66 [95% CI, 1.32-2.08). These results suggest distinct regulatory mechanisms for . In contrast, and showed positive associations with CAD risk, whereas () and () were associated with decreased risk.
Our findings provide multi-omics evidence suggesting that , , , , and genes are associated with CAD risk. This work provides novel insights into the molecular mechanisms of CAD and highlights the potential of integrating multi-omics data to uncover potential causal relationships that cannot be fully captured by traditional genome-wide association studies.
全基因组关联研究已经揭示了许多与冠状动脉疾病(CAD)相关的基因座。然而,一些潜在的因果/风险基因仍未被识别,且缺乏因果性治疗方法。
我们使用基于汇总数据的孟德尔随机化和共定位分析,整合了来自基因甲基化、表达和蛋白质水平的多组学数据。基于蛋白质水平关联、共定位概率以及与甲基化和表达的联系对候选基因进行优先级排序。单细胞RNA测序数据用于评估CAD患者冠状动脉中的差异表达。()、()和()被确定为与CAD关联最强的基因,其中表现出最显著的关联。特定胞嘧啶-磷酸-鸟嘌呤位点处的较高甲基化水平与其基因表达呈负相关,并与较低的CAD风险相关,而较高的循环TAGLN2蛋白水平与CAD风险呈正相关(优势比,1.66[95%CI,1.32 - 2.08])。这些结果表明了对的不同调控机制。相比之下,和与CAD风险呈正相关,而()和()与风险降低相关。
我们的研究结果提供了多组学证据,表明、、、和基因与CAD风险相关。这项工作为CAD的分子机制提供了新的见解,并强调了整合多组学数据以揭示传统全基因组关联研究无法完全捕捉的潜在因果关系的潜力。