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一种新型二酮哌嗪天冬酰胺菌素的生物合成,其包含来自……的犬尿氨酸单元。

Biosynthesis of a Novel Diketopiperazine Aspkyncin Incorporating a Kynurenine Unit from .

作者信息

Kong Dekun, Wang Xin, Liu Li

机构信息

College of Pharmaceutical Sciences, Southwest University, Chongqing 400715, China.

Laboratory of Biochemistry and Molecular Biology, Lab Teaching and Management Center, Chongqing Medical University, Chongqing 400016, China.

出版信息

J Fungi (Basel). 2025 Feb 20;11(3):171. doi: 10.3390/jof11030171.

DOI:10.3390/jof11030171
PMID:40137209
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11942691/
Abstract

The simplest cyclo-peptides, also known as diketopiperazines (DKPs), are widespread in nature. The growing interest in these simplest cyclo-peptides is driven by their significant potential for therapeutic applications. In this study, we identified a biosynthetic gene cluster from CRI323-04 through genome mining and heterologous expression in . The two core genes, and , within the gene cluster were characterized for their role in the biossoynthesis of aspkyncin, a novel DKP compound that incorporates a l-kynurenine (l-Kyn) unit. Furthermore, we successfully reconstituted the activities of the minimal bimodular non-ribosomal peptide synthetase (NRPS) AacA and the methyltransferase AacB both in vivo and in vitro. Our findings demonstrate that AacA catalyzes the condensation and cyclization of two non-proteinogenic amino acids, l-Kyn and -methyl-l-alanine, to produce aspkyncin without the involvement of any release domain. Notably, the -methyl-l-alanine is generated by a specialized l-alanine -methyltransferase AacB prior to NRP assembly. This study reveals an unconventional pathway for the biosynthesis of fungal DKPs.

摘要

最简单的环肽,也被称为二酮哌嗪(DKPs),在自然界中广泛存在。对这些最简单环肽的兴趣日益浓厚,是由它们在治疗应用方面的巨大潜力所驱动的。在本研究中,我们通过基因组挖掘和在……中的异源表达,从CRI323 - 04中鉴定出一个生物合成基因簇。该基因簇内的两个核心基因,……和……,因其在aspkyncin生物合成中的作用而得到表征,aspkyncin是一种新型的DKP化合物,包含一个L - 犬尿氨酸(L - Kyn)单元。此外,我们在体内和体外成功地重建了最小双模块非核糖体肽合成酶(NRPS)AacA和甲基转移酶AacB的活性。我们的研究结果表明,AacA催化两种非蛋白质ogenic氨基酸,L - Kyn和α - 甲基 - L - 丙氨酸的缩合和环化,以产生aspkyncin,而无需任何释放结构域的参与。值得注意的是,α - 甲基 - L - 丙氨酸是在NRP组装之前由一种特殊的L - 丙氨酸α - 甲基转移酶AacB产生的。这项研究揭示了真菌DKPs生物合成的一条非常规途径。

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本文引用的文献

1
2,5-Diketopiperazines (DKPs): Promising Scaffolds for Anticancer Agents.2,5-二酮哌嗪(DKPs):有前途的抗癌药物支架。
Curr Pharm Des. 2024;30(8):597-623. doi: 10.2174/0113816128291798240201112916.
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Genome Mining Discovery of a New Benzazepine Alkaloid Pseudofisnin A from the Marine Fungus F27-1.基于基因组挖掘从海洋真菌F27-1中发现一种新的苯并氮杂卓生物碱假弗斯宁A。
Antibiotics (Basel). 2022 Oct 20;11(10):1444. doi: 10.3390/antibiotics11101444.
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Aspcandine: A Pyrrolobenzazepine Alkaloid Synthesized by a Fungal Nonribosomal Peptide Synthetase-Polyketide Synthase Hybrid.
阿朴菲类生物碱:真菌非核糖体肽合成酶-聚酮合酶杂合子合成的吡咯并苯并二氮杂卓生物碱。
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A Global Review on Short Peptides: Frontiers and Perspectives.短肽的全球研究综述:前沿与展望。
Molecules. 2021 Jan 15;26(2):430. doi: 10.3390/molecules26020430.
5
Biosynthesis of a New Benzazepine Alkaloid Nanangelenin A from Involves an Unusual l-Kynurenine-Incorporating NRPS Catalyzing Regioselective Lactamization.新型苯并氮杂卓生物碱纳南格林 A 的生物合成涉及一种不寻常的 l-色氨酸掺入 NRPS 催化的区域选择性内酰胺化。
J Am Chem Soc. 2020 Apr 15;142(15):7145-7152. doi: 10.1021/jacs.0c01605. Epub 2020 Mar 31.
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Cyclodipeptide synthases: a promising biotechnological tool for the synthesis of diverse 2,5-diketopiperazines.环二肽合酶:一种有前途的生物技术工具,可用于合成各种 2,5-二酮哌嗪。
Nat Prod Rep. 2020 Mar 25;37(3):312-321. doi: 10.1039/c9np00036d.
7
Diketopiperazine Formation in Fungi Requires Dedicated Cyclization and Thiolation Domains.真菌中二酮哌嗪的形成需要专用的环化和硫代化结构域。
Angew Chem Int Ed Engl. 2019 Oct 7;58(41):14589-14593. doi: 10.1002/anie.201909052. Epub 2019 Aug 28.
8
Strategies for Engineering Natural Product Biosynthesis in Fungi: (Trends in Biotechnology 37, 416-427, 2019).真菌中天然产物生物合成的工程策略:(《生物技术趋势》第37卷,416 - 427页,2019年)
Trends Biotechnol. 2019 Aug;37(8):916. doi: 10.1016/j.tibtech.2019.03.014. Epub 2019 Apr 23.
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Strategies for Engineering Natural Product Biosynthesis in Fungi.真菌中天然产物生物合成的工程策略。
Trends Biotechnol. 2019 Apr;37(4):416-427. doi: 10.1016/j.tibtech.2018.09.003. Epub 2018 Oct 10.
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Discovery and Biosynthesis of the Antibiotic Bicyclomycin in Distantly Related Bacterial Classes.在远缘细菌类群中发现并生物合成抗生素双环霉素。
Appl Environ Microbiol. 2018 Apr 16;84(9). doi: 10.1128/AEM.02828-17. Print 2018 May 1.