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来自[具体来源未给出]的多功能海藻酸裂解酶:结构见解与催化机制

Multi-Functional Alginate Lyase from : Structural Insights and Catalytic Mechanisms.

作者信息

Huang Zhe, Liang Shuai, Jiang Wulong, Wang Li, Wang Yuan, Wang Hua, Wang Lianshun, Cong Yuting, Lu Yanan, Yang Guojun

机构信息

College of Fisheries and Life Science, National Demonstration Center for Experimental Aquaculture Education, Dalian Ocean University, Ministry of Education, Dalian 116023, China.

Key Laboratory of Mariculture & Stock Enhancement in North China's Sea, Ministry of Agriculture and Rural Affairs, Dalian Ocean University, Dalian 116023, China.

出版信息

Mar Drugs. 2025 Mar 13;23(3):124. doi: 10.3390/md23030124.

DOI:10.3390/md23030124
PMID:40137310
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11943690/
Abstract

In this study, we identified , a novel bifunctional alginate lyase from and characterized its biochemical properties and substrate specificity. Sequence alignment analysis inferred the key residues K267, H162, N86, E189, and T244 for catalysis, and it is derived from the PL7 family; exhibited high activity towards sodium alginate, polyM (PM), and polyG (PG); and can also degrade polygalacturonic acid (PGA) efficiently, with the highest affinity and catalytic efficiency for the MG block of the substrate. The optimal temperature and pH for were determined to be 40 °C and pH 8, respectively. The enzyme activity of was maximum at 40 °C, 40% of the enzyme activity was retained after incubation at 60 °C for 60 min, and enzyme activity was still present after 60 min incubation. activity was stimulated by 100 Mm NaCl, indicating a halophilic nature and suitability for marine environments. Degradation products analyzed using ESI-MS revealed that the enzyme primarily produced trisaccharides and tetrasaccharides. At 40 °C and pH 8.0, its values for sodium alginate, PM, and PG were 16.67 μmol, 13.12 μmol, and 22.86 μmol, respectively. Structural analysis and molecular docking studies unveiled the key catalytic residues involved in substrate recognition and interaction. Glu167 was identified as a critical residue for the PL7_5 subfamily, uniquely playing an essential role in alginate decomposition. Overall, exhibits great potential as a powerful bifunctional enzyme for the efficient preparation of alginate oligosaccharides, with promising applications in biotechnology and industrial fields.

摘要

在本研究中,我们从[具体来源]中鉴定出一种新型双功能海藻酸裂解酶,并对其生化特性和底物特异性进行了表征。序列比对分析推断出催化作用的关键残基K267、H162、N86、E189和T244,它源自PL7家族;对海藻酸钠、聚M(PM)和聚G(PG)表现出高活性;还能有效降解聚半乳糖醛酸(PGA),对底物的MG块具有最高的亲和力和催化效率。确定该酶的最佳温度和pH分别为40℃和pH 8。该酶的活性在40℃时最高,在60℃孵育60分钟后保留40%的酶活性,孵育60分钟后仍有酶活性。100 mM NaCl刺激该酶的活性,表明其具有嗜盐性且适合海洋环境。使用电喷雾电离质谱(ESI-MS)分析降解产物表明,该酶主要产生三糖和四糖。在40℃和pH 8.0条件下,其对海藻酸钠、PM和PG的Km值分别为16.67μmol、13.12μmol和22.86μmol。结构分析和分子对接研究揭示了参与底物识别和相互作用的关键催化残基。Glu167被确定为PL7_5亚家族的关键残基,在海藻酸分解中独特地发挥着重要作用。总体而言,该酶作为一种用于高效制备海藻寡糖的强大双功能酶具有巨大潜力,在生物技术和工业领域具有广阔的应用前景。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/429a10ae72e8/marinedrugs-23-00124-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/01c7255836a4/marinedrugs-23-00124-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/f9235d2e1b88/marinedrugs-23-00124-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/6abfe27bbb6d/marinedrugs-23-00124-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/54ecc45acf98/marinedrugs-23-00124-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/f7af671553aa/marinedrugs-23-00124-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/780664fa934c/marinedrugs-23-00124-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/8a47f2b18098/marinedrugs-23-00124-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/429a10ae72e8/marinedrugs-23-00124-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/01c7255836a4/marinedrugs-23-00124-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/f9235d2e1b88/marinedrugs-23-00124-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/6abfe27bbb6d/marinedrugs-23-00124-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/54ecc45acf98/marinedrugs-23-00124-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/f7af671553aa/marinedrugs-23-00124-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/780664fa934c/marinedrugs-23-00124-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/8a47f2b18098/marinedrugs-23-00124-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/55bc/11943690/429a10ae72e8/marinedrugs-23-00124-g008.jpg

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