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氮 K 边 X 射线吸收揭示的氨水周围的对称性破缺

Symmetry Breaking around Aqueous Ammonia Revealed in Nitrogen K-edge X-ray Absorption.

作者信息

Odelius Michael, Folkestad Sarai Dery, Saisopa Thanit, Rattanachai Yuttakarn, Sailuam Wutthigrai, Yuzawa Hayato, Kosugi Nobuhiro, Paul Alexander C, Koch Henrik, Céolin Denis

机构信息

Department of Physics, Stockholm University, 10691 Stockholm, Sweden.

Department of Chemistry, Norwegian University of Science and Technology, NTNU, 7491 Trondheim, Norway.

出版信息

J Phys Chem Lett. 2025 Apr 10;16(14):3411-3419. doi: 10.1021/acs.jpclett.4c03625. Epub 2025 Mar 27.

DOI:10.1021/acs.jpclett.4c03625
PMID:40146194
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11998083/
Abstract

Nitrogen K-edge X-ray absorption (XA) spectroscopy of aqueous ammonia reveals a splitting in the main-edge, which through theoretical modeling is shown to be related to symmetry breaking in hydrogen bonding. The XA main-edge of NH is formed by a pair of degenerate core-excitations into extended molecular orbitals. In aqueous solution, these form an antibonding mixture with orbitals of the surrounding water molecules. Although the spectral response to distortions is complex, we show that the degeneracy of the core-excitations is lifted by asymmetry in hydrogen bond donation (NH···O). A quantitative relation between asymmetry in the hydration shell and splitting in the main-edge of the nitrogen K-edge XA spectrum is established from systematic symmetry breaking in well-defined cluster models and through molecular dynamics sampling of simulated XA spectra of aqueous ammonia. The finding indicates that XA spectroscopy is a sensitive probe of asymmetry in solvation also around functional groups in biomolecules.

摘要

氨水溶液的氮 K 边 X 射线吸收(XA)光谱显示主边缘存在分裂,通过理论建模表明这与氢键中的对称性破缺有关。NH 的 XA 主边缘由一对简并的芯激发到扩展分子轨道形成。在水溶液中,这些与周围水分子的轨道形成反键混合物。尽管对畸变的光谱响应很复杂,但我们表明芯激发的简并性通过氢键供体(NH···O)中的不对称性而消除。通过在定义明确的簇模型中的系统对称性破缺以及对氨水溶液模拟 XA 光谱的分子动力学采样,建立了水合壳层中的不对称性与氮 K 边 XA 光谱主边缘分裂之间的定量关系。这一发现表明,XA 光谱也是生物分子中官能团周围溶剂化不对称性的灵敏探针。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/d7533353e259/jz4c03625_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/724b333e35da/jz4c03625_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/05cce69de18f/jz4c03625_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/baf151cfd3b7/jz4c03625_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/2b7a9dd8f324/jz4c03625_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/346f3651d43a/jz4c03625_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/d7533353e259/jz4c03625_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/724b333e35da/jz4c03625_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/05cce69de18f/jz4c03625_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/baf151cfd3b7/jz4c03625_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/2b7a9dd8f324/jz4c03625_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/346f3651d43a/jz4c03625_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4517/11998083/d7533353e259/jz4c03625_0006.jpg

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本文引用的文献

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Quantum Mechanical Versus Polarizable Embedding Schemes: A Study of the Xray Absorption Spectra of Aqueous Ammonia and Ammonium.量子力学与可极化嵌入方案:关于氨水和铵的X射线吸收光谱的研究
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在具有挑战性的环境中模拟X射线吸收光谱:水合氨和铵体系的方法学见解
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Infrared Spectroscopy in Aqueous Solutions: Capabilities and Challenges.水溶液中的红外光谱学:能力与挑战。
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