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特发性卵巢早衰的遗传学研究:比较基因组杂交芯片和新一代测序技术的作用

Genetics Investigation of Idiopathic Premature Ovarian Insufficiency: Contribution of Array-CGH and Next-Generation Sequencing.

作者信息

Cozette Claire, Pujalte Mathilde, Celton Noémie, Bosquet Dorian, Copin Henri, Cabry Rosalie, Garçon Loic, Benkhalifa Moncef, Scheffler Florence, Jedraszak Guillaume

机构信息

Reproductive Medicine and Biology Department, CECOS of Picardy, Amiens University Hospital, 80000 Amiens, France.

Department of Constitutional Genetics, Amiens University Hospital, 80000 Amiens, France.

出版信息

Genes (Basel). 2025 Feb 22;16(3):251. doi: 10.3390/genes16030251.

DOI:10.3390/genes16030251
PMID:40149403
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11942377/
Abstract

Premature ovarian insufficiency (POI), affecting 1% of women, is characterized by the loss of ovarian activity with amenorrhea or oligomenorrhea and increased gonadotropins occurring before the age of 40 years. Iatrogenic, autoimmune, and genetic causes are known to be involved in POI, but nearly 70% of all forms remain unexplained. Recent and new genetic analyses promote the identification of new candidate genes. The aim of this study was to evaluate the contribution of array-CGH and next-generation sequencing (NGS) in the diagnosis of POI. Twenty-eight idiopathic POI patients with primary or secondary amenorrhea underwent genetic screening by array-CGH and NGS using a custom capture design of 163 genes known or suspected to be involved in ovarian function. The clinical, biological, and ultrasound characteristics of the patients were also recorded. Four of the twenty-eight patients had primary amenorrhea (14.3%), and twenty-four (85.7%) had secondary amenorrhea, with an average age at diagnosis of 27.7. Eleven patients (39.3%) had a family history of POI. Our study identified a genetic anomaly in 16 of 28 patients (57.1%): one patient carried a causal copy number variation (CNV), eight patients carried a causal single nucleotide variation (SNV)/indel variation (28.6%), and seven other patients carried variants of uncertain significance. Our study was the first to combine genetic analyses by using both array-CGH and NGS in the same patients. It confirmed the usefulness of both analyses in the identification of pathogenic variations responsible for idiopathic POI. Early genetic diagnosis plays a major role in the management of complications and the screening of relatives.

摘要

卵巢早衰(POI)影响1%的女性,其特征是卵巢功能丧失,伴有闭经或月经过少,且促性腺激素在40岁之前升高。已知医源性、自身免疫性和遗传因素与POI有关,但所有类型中近70%仍无法解释。最近的新基因分析促进了新候选基因的识别。本研究的目的是评估比较基因组杂交芯片(array-CGH)和下一代测序(NGS)在POI诊断中的作用。28例原发性或继发性闭经的特发性POI患者通过array-CGH和NGS进行基因筛查,采用定制捕获设计,检测163个已知或怀疑与卵巢功能有关的基因。还记录了患者的临床、生物学和超声特征。28例患者中4例(14.3%)为原发性闭经,24例(85.7%)为继发性闭经,诊断时平均年龄为27.7岁。11例患者(39.3%)有POI家族史。我们的研究在28例患者中的16例(57.1%)中发现了基因异常:1例患者携带致病性拷贝数变异(CNV),8例患者携带致病性单核苷酸变异(SNV)/插入缺失变异(28.6%),其他7例患者携带意义未明的变异。我们的研究首次在同一患者中联合使用array-CGH和NGS进行基因分析。它证实了这两种分析方法在识别导致特发性POI的致病变异方面的有效性。早期基因诊断在并发症管理和亲属筛查中起着重要作用。

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本文引用的文献

1
The neglected members of the family: non-BRCA mutations in the Fanconi anemia/BRCA pathway and reproduction.家族中被忽视的成员:范可尼贫血/BRCA 通路中的非 BRCA 突变与生殖
Hum Reprod Update. 2022 Feb 28;28(2):296-311. doi: 10.1093/humupd/dmab045.
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Ankyrin-repeat and SOCS box-containing protein 9 (ASB9) regulates ovarian granulosa cells function and MAPK signaling.锚蛋白重复和 SOCS 盒蛋白 9(ASB9)调节卵巢颗粒细胞功能和 MAPK 信号通路。
Mol Reprod Dev. 2021 Dec;88(12):830-843. doi: 10.1002/mrd.23532. Epub 2021 Sep 2.
3
Next Generation Sequencing Should Be Proposed to Every Woman With "Idiopathic" Primary Ovarian Insufficiency.对于每一位患有“特发性”原发性卵巢功能不全的女性,都应建议进行下一代测序。
J Endocr Soc. 2021 Mar 1;5(7):bvab032. doi: 10.1210/jendso/bvab032. eCollection 2021 Jul 1.
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Genetic etiologic analysis in 74 Chinese Han women with idiopathic premature ovarian insufficiency by combined molecular genetic testing.采用联合分子遗传学检测方法对 74 例中国汉族特发性卵巢功能不全女性进行遗传病因分析。
J Assist Reprod Genet. 2021 Apr;38(4):965-978. doi: 10.1007/s10815-021-02083-7. Epub 2021 Feb 4.
5
Screening of targeted panel genes in Brazilian patients with primary ovarian insufficiency.巴西原发性卵巢功能不全患者靶向panel 基因筛查。
PLoS One. 2020 Oct 23;15(10):e0240795. doi: 10.1371/journal.pone.0240795. eCollection 2020.
6
Whole-exome sequencing in patients with premature ovarian insufficiency: early detection and early intervention.对卵巢早衰患者进行全外显子组测序:早发现、早干预。
J Ovarian Res. 2020 Sep 22;13(1):114. doi: 10.1186/s13048-020-00716-6.
7
Oocyte maturation arrest produced by mutations: impact of genetic disorders in infertility treatment.由 突变引起的卵母细胞成熟阻滞:遗传疾病对不孕治疗的影响。
Gynecol Endocrinol. 2020 Sep;36(9):829-834. doi: 10.1080/09513590.2020.1725968. Epub 2020 Feb 17.
8
DNA repair functional analyses of NBN hypomorphic variants associated with NBN-related infertility.与 NBN 相关不孕相关的 NBN 功能减弱变异体的 DNA 修复功能分析。
Hum Mutat. 2020 Mar;41(3):608-618. doi: 10.1002/humu.23955. Epub 2019 Nov 28.
9
Genetics of human female infertility†.人类女性不孕的遗传学研究。
Biol Reprod. 2019 Sep 1;101(3):549-566. doi: 10.1093/biolre/ioz084.
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