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基因家族的全基因组鉴定与进化分析:对嗅觉能力进化及触角表达模式的洞察

Genome-Wide Identification and Evolutionary Analysis of Gene Family: Insights into Olfaction Ability Evolution and Antennal Expression Patterns in .

作者信息

Yang Wen-Qi, Ding Ge, Wang Lin-Lin, Yin Chi-Jie, Wu Hai-Yue, Zhang Hua-Bin, Liu Qiu-Ning, Jiang Sen-Hao, Tang Bo-Ping, Wang Gang, Zhang Dai-Zhen

机构信息

Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, Jiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Synthetic Innovation Center for Coastal Bio-Agriculture, Yancheng Teachers University, Yancheng 224051, China.

College of Fisheries and Life Science, Shanghai Ocean University, Shanghai 201306, China.

出版信息

Animals (Basel). 2025 Mar 16;15(6):852. doi: 10.3390/ani15060852.

Abstract

Olfaction plays a crucial role in crustaceans for essential activities such as foraging and predator evasion. Among the components involved in olfactory perception, () are particularly important. , a perennial crustacean of substantial economic and ecological value, serves as an ideal model for studying olfactory mechanisms. Identifying the chemosensory genes in enhances our understanding of its olfactory recognition system. Based on the whole-genome data of , we identified and analyzed 50 members of the gene family () through bioinformatics approaches. These genes were classified into subfamilies of co-receptor and tuning . The physicochemical properties of the encoded proteins exhibit marked variability, indicating distinct roles. The motif types and conserved domains among these subfamilies display certain similarities, but their gene structures differ markedly. Furthermore, we found that , , and are key nodes in protein-protein interaction networks, coordinating organisms' responses to signals like temperature and acids. We utilized fluorescence in situ hybridization (FISH) to find that and demonstrated robust expression signals in the antennae of the . These findings lay a foundation for further investigations and elucidate the functional roles of olfactory receptor genes in crustaceans.

摘要

嗅觉在甲壳类动物的觅食和躲避捕食者等基本活动中起着至关重要的作用。在参与嗅觉感知的成分中,()尤为重要。,一种具有重大经济和生态价值的多年生甲壳类动物,是研究嗅觉机制的理想模型。鉴定中的化学感应基因有助于我们更好地理解其嗅觉识别系统。基于的全基因组数据,我们通过生物信息学方法鉴定并分析了基因家族()的50个成员。这些基因被分为共同受体和调谐的亚家族。编码蛋白的理化性质表现出明显的变异性,表明其具有不同的作用。这些亚家族中的基序类型和保守结构域显示出一定的相似性,但其基因结构差异显著。此外,我们发现,和是蛋白质-蛋白质相互作用网络中的关键节点,协调生物体对温度和酸等信号的反应。我们利用荧光原位杂交(FISH)发现和在的触角中显示出强烈的表达信号。这些发现为进一步研究奠定了基础,并阐明了嗅觉受体基因在甲壳类动物中的功能作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5408/11939437/bfc93b9fb370/animals-15-00852-g001.jpg

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