Huang Yan, Li Yipeng, Wang Lingyun, Zhang Shangfa, Li Linyan, Song Ruiqi, Sheng Wei, Zheng Zhaisheng, Zhang Xinyi, Yang Mengfei, Qiu Yingxiong
Zhejiang Provincial Key Laboratory of Characteristic Aquatic Vegetable Breeding and Cultivation, Jinhua Academy of Agricultural Sciences (Zhejiang Institute of Agricultural Machinery), Jinhua, 321051, China.
Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China.
Sci Data. 2025 Mar 31;12(1):535. doi: 10.1038/s41597-025-04853-9.
Cultivated Zizania latifolia, commonly known as Jiaobai, was domesticated as a special form of a plant-fungus symbiont. It is one of the most popular aquatic vegetables endemic to East Asia. However, the absence of a reference genome has hindered research on this important vegetable. In this study, we sequenced and assembled a chromosome-level genome of Jiaobai, the size of which is 596.34 Mb with a contig N50 of 32.74 Mb by integrating PacBio, Illumina and chromosome conformation capture data. A total of 571.70 Mb (95.87%) of the assembled sequences were anchored onto 17 chromosomes and 36,286 gene models were predicted. This study provides valuable genomic resources for uncovering the mechanisms underlying plant-pathogenic fungus interactions and developing genomics-assisted breeding programs in Jiaobai.
栽培茭白,俗称茭儿菜,是作为一种特殊形式的植物 - 真菌共生体被驯化的。它是东亚特有的最受欢迎的水生蔬菜之一。然而,缺乏参考基因组阻碍了对这种重要蔬菜的研究。在本研究中,我们通过整合PacBio、Illumina和染色体构象捕获数据,对茭白进行了测序和组装,得到了一个染色体水平的基因组,其大小为596.34 Mb,重叠群N50为32.74 Mb。总共571.70 Mb(95.87%)的组装序列被锚定到17条染色体上,并预测了36,286个基因模型。本研究为揭示植物 - 病原真菌相互作用的机制以及开展茭白的基因组辅助育种计划提供了有价值的基因组资源。