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用于脑脊液中高通量蛋白质生物标志物发现的Olink Explore技术

Olink Explore for High-Throughput Protein Biomarker Discovery in Cerebrospinal Fluid.

作者信息

Boluda-Navarro Mireia

机构信息

Health in Code (HiC), Valencia, Spain.

出版信息

Methods Mol Biol. 2025;2914:141-163. doi: 10.1007/978-1-0716-4462-1_12.

DOI:10.1007/978-1-0716-4462-1_12
PMID:40167917
Abstract

The Olink Explore platform enables high-throughput protein biomarker discovery through Proximity Extension Assay (PEA) technology combined with Next Generation Sequencing (NGS) on Illumina instruments. This approach allows for the simultaneous measurement of thousands of human plasma proteins with minimal sample volumes. The Explore 3072 library offers approximately 3000 protein assays, while the smaller Explore 384-plex panels cater to more targeted studies. The platform excels in detecting low-abundance proteins, such as cytokines and chemokines, and is particularly effective for challenging sample types like cerebrospinal fluid (CSF), where protein content is typically low. In this chapter, we emphasize critical dry-lab considerations, including CSF handling, study design, sample size determination, instrumentation requirements, and post-experiment data management. Proper planning and execution of these factors are essential for optimizing performance and ensuring reliable outcomes when using Olink's platform.

摘要

Olink Explore平台通过邻近延伸分析(PEA)技术与Illumina仪器上的下一代测序(NGS)相结合,实现高通量蛋白质生物标志物的发现。这种方法能够以最小的样本量同时测量数千种人血浆蛋白。Explore 3072文库提供约3000种蛋白质检测,而较小的Explore 384孔板则适用于更具针对性的研究。该平台在检测低丰度蛋白(如细胞因子和趋化因子)方面表现出色,对于蛋白质含量通常较低的挑战性样本类型(如脑脊液(CSF))尤为有效。在本章中,我们强调关键的实验前考虑因素,包括脑脊液处理、研究设计、样本量确定、仪器要求和实验后数据管理。在使用Olink平台时,对这些因素进行妥善规划和执行对于优化性能和确保可靠结果至关重要。

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本文引用的文献

1
Cerebrospinal fluid proteomics targeted for central nervous system processes in bipolar disorder.针对双相情感障碍中枢神经系统过程的脑脊液蛋白质组学。
Mol Psychiatry. 2021 Dec;26(12):7446-7453. doi: 10.1038/s41380-021-01236-5. Epub 2021 Aug 4.
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Inflammatory Leptomeningeal Cytokines Mediate COVID-19 Neurologic Symptoms in Cancer Patients.炎症性软脑膜细胞因子介导癌症患者的COVID-19神经系统症状。
Cancer Cell. 2021 Feb 8;39(2):276-283.e3. doi: 10.1016/j.ccell.2021.01.007. Epub 2021 Jan 16.