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生物记录智能平台(BiP):一个用于共享、可视化和分析生物记录数据的集成标准化平台。

Biologging intelligent Platform (BiP): an integrated and standardized platform for sharing, visualizing, and analyzing biologging data.

作者信息

Sato Katsufumi, Watanabe Shinichi, Noda Takuji, Koizumi Takuya, Yoda Ken, Watanabe Yuuki Y, Sakamoto Kentaro Q, Isokawa Teijiro, Yoshida Makoto A, Aoki Kagari, Takahashi Akinori, Iwata Takashi, Nishizawa Hideaki, Maekawa Takuya, Kawabe Ryo, Watanuki Yutaka

机构信息

Atmosphere and Ocean Research Institute, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa City, Chiba Prefecture, 277-8564, Japan.

Little Leonardo Corp, 1-10-3 Honkomagome, Bunkyo-ku, Tokyo, 113-0021, Japan.

出版信息

Mov Ecol. 2025 Apr 1;13(1):23. doi: 10.1186/s40462-025-00551-8.

Abstract

Sharing biologging data can facilitate collaborative research and biological conservation by providing maps showing animals' distribution and movements. It is a critical social mission to preserve not only horizontal position data, but also behavioral data such as diving depth, flight altitude, speed, and acceleration, as well as physiological data such as body temperature, along with related metadata, ensuring their preservation for future generation. Moreover, although biologging was initially developed in the field of biology, it now contributes to diverse fields such as meteorology and oceanography, leading to expanded opportunities for secondary data utilization. In light of social and academic requirements, we developed "Biologging intelligent Platform (BiP)", which adheres to internationally recognized standards for sensor data and metadata storage. As a result, BiP not only stores sensor data along with metadata but also standardizes this information to facilitate secondary data analysis, facilitating broader applications of biologging data across various disciplines. By visiting the website ( https://www.bip-earth.com ) and completing the user registration, data owners can interactively upload sensor data, input metadata associated with individual animals, devices, and deployments, standardize data formats, and choose between open and private settings for sharing data. Anyone interested in utilizing the data can access metadata and visualized route maps, irrespective of the data's open or private status. Users can freely download open datasets that are available under the CC BY 4.0 license, which permits copying, redistribution, and modification while adhering to the metadata's credit requirements. To use private datasets, users can contact the data owner to request permission. A unique feature of BiP is the Online Analytical Processing (OLAP) tools that calculate environmental parameters, such as surface currents, ocean winds, and waves from data collected by animals. Algorithms published in some previous studies are integrated into the OLAP which can estimate the environmental and behavioral parameters. To enhance data accessibility, BiP allows users to search for datasets using the DOI of the paper in which the data was used. We believe that linking with other databases for data exchange and multi-repository storage could enhance the sustainability of the data itself.

摘要

共享生物记录数据可以通过提供显示动物分布和活动的地图来促进合作研究和生物保护。不仅要保存水平位置数据,还要保存诸如潜水深度、飞行高度、速度和加速度等行为数据,以及体温等生理数据,连同相关的元数据,确保为后代保存这些数据,这是一项至关重要的社会使命。此外,尽管生物记录最初是在生物学领域开发的,但现在它为气象学和海洋学等多个领域做出了贡献,从而带来了更多二次数据利用的机会。根据社会和学术需求,我们开发了“生物记录智能平台(BiP)”,该平台遵循国际认可的传感器数据和元数据存储标准。因此,BiP不仅存储传感器数据及其元数据,还对这些信息进行标准化,以方便二次数据分析,促进生物记录数据在各个学科中的更广泛应用。通过访问网站(https://www.bip-earth.com )并完成用户注册,数据所有者可以交互式地上传传感器数据,输入与个体动物、设备和部署相关的元数据,标准化数据格式,并在开放和私有设置之间选择以共享数据。任何有兴趣使用这些数据的人都可以访问元数据和可视化路线图,无论数据的开放或私有状态如何。用户可以免费下载根据CC BY 4.0许可提供的开放数据集,该许可允许在遵守元数据的引用要求的同时进行复制、重新分发和修改。要使用私有数据集,用户可以联系数据所有者请求许可。BiP的一个独特功能是在线分析处理(OLAP)工具,该工具可以根据动物收集的数据计算环境参数,如表层洋流、海风和海浪。一些先前研究中发表的算法被集成到OLAP中,该算法可以估计环境和行为参数。为了提高数据的可访问性,BiP允许用户使用使用该数据的论文的数字对象标识符(DOI)搜索数据集。我们相信,与其他数据库进行数据交换和多库存储可以提高数据本身的可持续性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0c67/11959716/2f2d8b8acdcc/40462_2025_551_Fig1_HTML.jpg

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