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探索双硫仑在肾纤维化中的作用机制:来自生物学数据和计算方法的见解。

Exploring disulfiram mechanisms in renal fibrosis: insights from biological data and computational approaches.

作者信息

Patil Vishal S, Patil Chandragouda R, Patel Harun M, Kumar Anoop

机构信息

Department of Pharmacology, R. C. Patel Institute of Pharmaceutical Education and Research, Shirpur, India.

Department of Pharmaceutical Chemistry, R. C. Patel Institute of Pharmaceutical Education and Research, Shirpur, India.

出版信息

Front Pharmacol. 2025 Mar 18;16:1480732. doi: 10.3389/fphar.2025.1480732. eCollection 2025.

Abstract

BACKGROUND

Disulfiram (DSF) is an anti-alcoholic drug that has been reported to inhibit the epithelial-to-mesenchymal transition and crosslinking during fibrosis, pyroptosis, and inflammatory NF-κB and Nrf-2 signaling pathways. However, there is insufficient evidence to support the mechanisms of DSF in preventing renal fibrosis (RF). Therefore, the current study aimed to elucidate the DSF-modulated targets and pathways in renal fibrosis.

METHODS

The common proteins between DSF and RF were screened for protein-protein interaction, pathway enrichment, cluster, and gene ontology analysis. Molecular docking was executed for core genes using AutoDock Vina through the POAP pipeline. Molecular dynamics (MD) simulation (100 ns) was performed to infer protein-ligand stability, and conformational changes were analyzed by free energy landscape (FEL).

RESULTS

A total of 78 targets were found to be common between DSF and RF, of which , , , and were the core genes. PI3K-Akt signaling followed by JAK-STAT, TNF, Ras, ErbB, p53, phospholipase D, mTOR, IL-17, NF-κB, AMPK, VEGF, and MAPK signaling pathways were modulated by DSF in RF. DSF showed a direct binding affinity with active site residues of core genes, and except for DSF with NF-κB, all other complexes, including the standard, were found to be stable during 100 ns MD simulation with minimal protein-ligand root mean squared deviation and residual fluctuations and higher compactness with broad conformational changes.

CONCLUSION

DSF protects against renal fibrosis, and this study paves the way for experimental investigation to repurpose DSF for treating RF.

摘要

背景

双硫仑(DSF)是一种抗酒精药物,据报道可抑制纤维化、细胞焦亡过程中的上皮-间质转化和交联,以及炎症性核因子-κB(NF-κB)和核因子E2相关因子2(Nrf-2)信号通路。然而,尚无充分证据支持双硫仑预防肾纤维化(RF)的机制。因此,本研究旨在阐明双硫仑在肾纤维化中调节的靶点和通路。

方法

筛选双硫仑和肾纤维化之间的常见蛋白质,进行蛋白质-蛋白质相互作用、通路富集、聚类和基因本体分析。使用AutoDock Vina通过POAP管道对核心基因进行分子对接。进行分子动力学(MD)模拟(100纳秒)以推断蛋白质-配体稳定性,并通过自由能景观(FEL)分析构象变化。

结果

共发现双硫仑和肾纤维化之间有78个共同靶点,其中 、 、 和 是核心基因。双硫仑在肾纤维化中调节磷脂酰肌醇-3激酶-蛋白激酶B(PI3K-Akt)信号通路,其次是 Janus激酶-信号转导和转录激活因子(JAK-STAT)、肿瘤坏死因子(TNF)、Ras、表皮生长因子受体(ErbB)、p53、磷脂酶D、哺乳动物雷帕霉素靶蛋白(mTOR)、白细胞介素-17(IL-17)、NF-κB、腺苷酸活化蛋白激酶(AMPK)、血管内皮生长因子(VEGF)和丝裂原活化蛋白激酶(MAPK)信号通路。双硫仑与核心基因的活性位点残基表现出直接结合亲和力,除双硫仑与NF-κB外,在100纳秒的MD模拟过程中,所有其他复合物(包括标准复合物)均被发现是稳定的,蛋白质-配体均方根偏差和残余波动最小,具有更高的紧密性和广泛的构象变化。

结论

双硫仑可预防肾纤维化,本研究为重新利用双硫仑治疗肾纤维化的实验研究铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7b4b/11958968/18e2687c606e/fphar-16-1480732-g001.jpg

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