• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于简化基因组测序分析揭示中国大陆和台湾杉木种群的遗传分化及其对该物种分类地位的启示

Genetic Differentiation of Chinese Fir Populations From Mainland China and Taiwan as Revealed by Genotyping-By-Sequencing Analysis, With Implication for Taxonomic Position of the Species.

作者信息

Zhang Yajing, Sun Yangyang, Zhong Minchen, Chen Fenglin, Wang Yaning, Tigabu Mulualem, Ma XiangQing, Li Ming

机构信息

College of Forestry Fujian Agriculture and Forestry University Fuzhou China.

Chinese Fir Germplasm Innovation Engineering Research Center of Fujian Province Fuzhou China.

出版信息

Ecol Evol. 2025 Apr 11;15(4):e71270. doi: 10.1002/ece3.71270. eCollection 2025 Apr.

DOI:10.1002/ece3.71270
PMID:40225883
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11992008/
Abstract

Climate change and strait isolation during the glacial period had a profound effect on the differentiation of gymnosperms on both sides of the Taiwan Strait. The taxonomic status and population structure of (Taiwan) and (mainland China) remain contentious due to conflicting morphological and molecular evidence. Thus, we sampled 92 accessions from seven natural populations, six from mainland China and one from Taiwan, and conducted high-throughput genotyping-by-sequencing (GBS) analysis. The northern marginal population exhibited the lowest genetic diversity ( = 4.828 × 10), while the Taiwan population had the highest ( = 5.821 × 10), reflecting its role as a glacial refugium, while mainland populations retained lower diversity due to post-glacial bottlenecks. There was little difference in Tajima's D values of selection pressure between mainland China and Taiwan. However, significant gene flow ( = 2.839) was observed, combined with low values (0.072-0.122), which indicate low genetic differentiation among and . Migration analysis indicated a high probability of unidirectional gene flow from mainland China to Taiwan, with the Dongshan Land Bridge facilitating pre-glacial gene flow. We conclude that represents an ecotype of , shaped by environmental plasticity and incomplete isolation. This study enhances our understanding of the gene flow and evolutionary processes shaping the species and offers new insights into their taxonomic classification.

摘要

气候变化和冰川期的海峡隔离对台湾海峡两岸裸子植物的分化产生了深远影响。由于形态学和分子证据相互矛盾,(台湾的)[具体物种名1]和(中国大陆的)[具体物种名2]的分类地位和种群结构仍存在争议。因此,我们从七个自然种群中采集了92份样本,其中六个来自中国大陆,一个来自台湾,并进行了高通量测序基因分型(GBS)分析。北方边缘种群的遗传多样性最低( = 4.828 × 10),而台湾种群的遗传多样性最高( = 5.821 × 10),这反映了其作为冰川避难所的作用,而大陆种群由于冰后期瓶颈而保留了较低的多样性。中国大陆和台湾之间在选择压力的Tajima's D值上差异不大。然而,观察到显著的基因流( = 2.839),同时伴随着较低的[具体指标值]值(0.072 - 0.122),这表明[具体物种名1]和[具体物种名2]之间的遗传分化较低。迁移分析表明,存在从中国大陆到台湾的单向基因流的高可能性,东山陆桥促进了冰期前的基因流。我们得出结论,[具体物种名1]代表了[具体物种名2]的一种生态型,由环境可塑性和不完全隔离塑造而成。本研究增进了我们对塑造该物种的基因流和进化过程的理解,并为其分类学分类提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/472b76e038e2/ECE3-15-e71270-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/803a4292b81d/ECE3-15-e71270-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/4a8182d81507/ECE3-15-e71270-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/311739be4927/ECE3-15-e71270-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/71b00ce3687a/ECE3-15-e71270-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/149d65ac5a25/ECE3-15-e71270-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/472b76e038e2/ECE3-15-e71270-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/803a4292b81d/ECE3-15-e71270-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/4a8182d81507/ECE3-15-e71270-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/311739be4927/ECE3-15-e71270-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/71b00ce3687a/ECE3-15-e71270-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/149d65ac5a25/ECE3-15-e71270-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6abb/11992008/472b76e038e2/ECE3-15-e71270-g001.jpg

相似文献

1
Genetic Differentiation of Chinese Fir Populations From Mainland China and Taiwan as Revealed by Genotyping-By-Sequencing Analysis, With Implication for Taxonomic Position of the Species.基于简化基因组测序分析揭示中国大陆和台湾杉木种群的遗传分化及其对该物种分类地位的启示
Ecol Evol. 2025 Apr 11;15(4):e71270. doi: 10.1002/ece3.71270. eCollection 2025 Apr.
2
Genetic diversity and biogeography of Cunninghamia konishii (Cupressaceae), an island species in Taiwan: a comparison with Cunninghamia lanceolata, a mainland species in China.台湾岛特有种台湾杉木(柏科)的遗传多样性与生物地理学:与中国大陆物种杉木的比较
Mol Phylogenet Evol. 2004 Dec;33(3):791-801. doi: 10.1016/j.ympev.2004.08.011.
3
Postglacial population growth of Cunninghamia konishii (Cupressaceae) inferred from phylogeographical and mismatch analysis of chloroplast DNA variation.基于叶绿体DNA变异的系统地理学和失配分析推断日本柳杉(柏科)冰期后的种群增长
Mol Ecol. 2003 Oct;12(10):2689-95. doi: 10.1046/j.1365-294x.2003.01935.x.
4
Chloroplast DNA phylogeography of Cunninghamia konishii (Cupressaceae), an endemic conifer of Taiwan.台湾特有针叶树台湾油杉(柏科)的叶绿体DNA系统地理学
Genome. 2001 Oct;44(5):797-807.
5
Genetic diversity and variation of Chinese fir from Fujian province and Taiwan, China, based on ISSR markers.基于ISSR标记的中国福建和台湾杉木的遗传多样性与变异
PLoS One. 2017 Apr 13;12(4):e0175571. doi: 10.1371/journal.pone.0175571. eCollection 2017.
6
Next-generation sequencing-based population genetics unravels the evolutionary history of Rhodomyrtus tomentosa in China.基于新一代测序的群体遗传学揭示了中国桃金娘的进化历史。
BMC Plant Biol. 2025 Mar 15;25(1):338. doi: 10.1186/s12870-025-06364-6.
7
Demographic history and population genetic structure of Anisakis pegreffii in the cutlassfish Trichiurus japonicus along the coast of mainland China and Taiwan.中国大陆及台湾沿海日本带鱼体内派氏异尖线虫的种群历史与群体遗传结构
Parasitol Res. 2022 Oct;121(10):2803-2816. doi: 10.1007/s00436-022-07611-7. Epub 2022 Aug 3.
8
Mitochondrial diversity and phylogeography of Acrossocheilus paradoxus (Teleostei: Cyprinidae).似刺鳊鮈(硬骨鱼纲:鲤科)的线粒体多样性与系统地理学
Mitochondrial DNA A DNA Mapp Seq Anal. 2018 Dec;29(8):1194-1202. doi: 10.1080/24701394.2018.1431227. Epub 2018 Jan 31.
9
Response of Rhizosphere Bacterial Communities to Near-Natural Forest Management and Tree Species within Chinese Fir Plantations.根际细菌群落对近自然森林管理和杉木人工林树种的响应。
Microbiol Spectr. 2023 Feb 14;11(1):e0232822. doi: 10.1128/spectrum.02328-22. Epub 2023 Jan 23.
10
Genome survey of Chinese fir (Cunninghamia lanceolata): Identification of genomic SSRs and demonstration of their utility in genetic diversity analysis.中国福建柏基因组调查:基因组 SSRs 的鉴定及其在遗传多样性分析中的应用。
Sci Rep. 2020 Mar 13;10(1):4698. doi: 10.1038/s41598-020-61611-0.

本文引用的文献

1
Inbreeding in Chinese Fir: Insight into the Rare Self-Fertilizing Event from a Genetic View.中国冷杉的近亲繁殖:从遗传角度洞察罕见的自花受精事件。
Genes (Basel). 2022 Nov 13;13(11):2105. doi: 10.3390/genes13112105.
2
Genome-Wide Association Study With Growth-Related Traits and Secondary Metabolite Contents in Red- and White-Heart Chinese Fir.红心与白心杉木生长相关性状和次生代谢物含量的全基因组关联研究
Front Plant Sci. 2022 Jun 30;13:922007. doi: 10.3389/fpls.2022.922007. eCollection 2022.
3
Genetic Diversity and Population Structure of Asian and European Common Wheat Accessions Based on Genotyping-By-Sequencing.
基于简化基因组测序的亚洲和欧洲普通小麦种质的遗传多样性与群体结构
Front Genet. 2020 Sep 25;11:580782. doi: 10.3389/fgene.2020.580782. eCollection 2020.
4
Genomic diversity and population structure of the indigenous Greek and Cypriot cattle populations.希腊和塞浦路斯本土牛种群的基因组多样性和种群结构。
Genet Sel Evol. 2020 Jul 29;52(1):43. doi: 10.1186/s12711-020-00560-8.
5
Genome survey of Chinese fir (Cunninghamia lanceolata): Identification of genomic SSRs and demonstration of their utility in genetic diversity analysis.中国福建柏基因组调查:基因组 SSRs 的鉴定及其在遗传多样性分析中的应用。
Sci Rep. 2020 Mar 13;10(1):4698. doi: 10.1038/s41598-020-61611-0.
6
Parentage and relatedness reconstruction in Pinus sylvestris using genotyping-by-sequencing.利用基因分型测序技术重建欧洲赤松的亲子关系和亲缘关系。
Heredity (Edinb). 2020 May;124(5):633-646. doi: 10.1038/s41437-020-0302-3. Epub 2020 Mar 2.
7
Re-epithelialization and immune cell behaviour in an ex vivo human skin model.体外人皮肤模型中的再上皮化和免疫细胞行为。
Sci Rep. 2020 Jan 8;10(1):1. doi: 10.1038/s41598-019-56847-4.
8
Scanning RNA-Seq and RAD-Seq approach to develop SNP markers closely linked to () in D. Don.利用扫描RNA测序和RAD测序方法开发与唐松草属(D. Don)中()紧密连锁的单核苷酸多态性(SNP)标记
Breed Sci. 2019 Mar;69(1):19-29. doi: 10.1270/jsbbs.17149. Epub 2019 Feb 15.
9
Population Genetic Structure in Glyphosate-Resistant and -Susceptible Palmer Amaranth () Populations Using Genotyping-by-sequencing (GBS).利用简化基因组测序(GBS)分析抗草甘膦和敏感型糙果苋种群的群体遗传结构
Front Plant Sci. 2018 Jan 25;9:29. doi: 10.3389/fpls.2018.00029. eCollection 2018.
10
Diversity in Grain Amaranths and Relatives Distinguished by Genotyping by Sequencing (GBS).通过简化基因组测序(GBS)鉴定的苋属谷物及其近缘种的多样性
Front Plant Sci. 2017 Nov 17;8:1960. doi: 10.3389/fpls.2017.01960. eCollection 2017.