Gálvez J Pablo, Zúñiga José, Cerezo Javier
Departamento de Química Física, Universidad de Murcia, 30100 Murcia, Spain.
Departamento de Química and Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain.
J Chem Theory Comput. 2025 Apr 22;21(8):3888-3901. doi: 10.1021/acs.jctc.5c00281. Epub 2025 Apr 14.
In this work, we present two alternative computational strategies to determine the populations of nonbonded aggregates. One approach extracts these populations from molecular dynamics (MD) simulations, while the other employs quantum mechanical partition functions for the most relevant minima of the multimolecular potential energy surfaces (PESs), identified by automated conformational sampling. In both cases, we adopt a common graph-theory-based framework, introduced in this work, for identifying aggregate conformations, which enables a consistent comparative assessment of both methodologies and provides insight into the underlying approximations. We apply both strategies to investigate phenol aggregates, up to the tetramer, at different concentrations in phenol/carbon tetrachloride mixtures. Subsequently, we simulate the concentration-dependent OH stretching IR region by averaging the harmonic Infrared (IR) spectra of aggregates using the populations predicted by each strategy. Our results indicate that the populations extracted from MD trajectories yield OH stretching signals that closely follow the experimental trends, outperforming the spectra from populations obtained by systematic conformational searches. Such a better performance of MD is attributed to a better description of the entropic contributions. Moreover, the proposed protocol not only successfully addresses a very challenging problem but also offers a benchmark to assess the accuracy of the intermolecular force fields.
在这项工作中,我们提出了两种用于确定非键聚集体数量的替代计算策略。一种方法是从分子动力学(MD)模拟中提取这些数量,而另一种方法则对通过自动构象采样确定的多分子势能面(PES)的最相关极小值采用量子力学配分函数。在这两种情况下,我们都采用了本文中引入的基于图论的通用框架来识别聚集体构象,这使得能够对两种方法进行一致的比较评估,并深入了解潜在的近似值。我们应用这两种策略来研究苯酚/四氯化碳混合物中不同浓度下直至四聚体的苯酚聚集体。随后,我们使用每种策略预测的数量对聚集体的谐波红外(IR)光谱进行平均,从而模拟浓度依赖性的OH伸缩红外区域。我们的结果表明,从MD轨迹中提取的数量产生的OH伸缩信号与实验趋势密切相关,优于通过系统构象搜索获得的数量所对应的光谱。MD的这种更好性能归因于对熵贡献的更好描述。此外,所提出的方案不仅成功解决了一个极具挑战性的问题,还提供了一个评估分子间力场准确性的基准。