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根起始缺陷1以温度依赖的方式通过转录而非可变剪接来调控种子萌发。

ROOT INITIATION DEFECTIVE 1 regulates seed germination through transcription rather than alternative splicing in a temperature-dependent manner.

作者信息

Zhou Shuaishuai, Wang Miaomiao, Chen Ruoyi, Yu Wengeng, Li Mengmeng, Meng Siwen, Zhang Ziru, Xia Congcong, Zhao Hongtao, Liu Lei

机构信息

Jiangsu Key Laboratory for Eco-Agriculture Biotechnology Around Hongze Lake, Jiangsu Collaborative Innovation Center of Regional Modern Agriculture and Environment Protection, Huaiyin Normal University, Huai'an, 223300, China.

College of Life Science, Hebei Normal University, Hebei, 050024, China.

出版信息

Plant Mol Biol. 2025 Apr 16;115(3):58. doi: 10.1007/s11103-025-01587-5.

DOI:10.1007/s11103-025-01587-5
PMID:40240680
Abstract

Timely seed germination is a crucial process for plant survival and subsequent propagation, which is significantly impacted by high temperatures. ROOT INITIATION DEFECTIVE 1 (RID1), an Arabidopsis DEAH/RHA RNA helicase, has been previously reported to modulate the cellular specification of mature female gametophyte and callus initiation from hypocotyl explants through proper alternative splicing. However, the role of RID1 in the regulation of seed germination remains largely unexplored. Here, we identified that mutations in RID1 delayed seed germination more severely at 28℃ compared to 22℃. Notably, we found that the rid1-1 mutation did not significantly alter genome-wide alternative splicing patterns during seed germination compared to the wild type. Further evidences demonstrated that RID1 regulates seed germination via the abscisic acid (ABA) pathway by physically and genetically interacting with the SKIP-associated transcriptional complex. These results suggest that RID1 regulates seed germination in response to ambient temperature at the transcriptional level rather than through alternative splicing regulation. This study provides novel insights into the mechanisms underlying the regulation of seed germination.

摘要

及时的种子萌发是植物存活及后续繁殖的关键过程,这一过程会受到高温的显著影响。拟南芥DEAH/RHA RNA解旋酶ROOT INITIATION DEFECTIVE 1(RID1)此前已被报道可通过适当的可变剪接来调节成熟雌配子体的细胞特化以及下胚轴外植体的愈伤组织起始。然而,RID1在种子萌发调控中的作用在很大程度上仍未得到探索。在此,我们发现与22℃相比,RID1突变在28℃时更严重地延迟了种子萌发。值得注意的是,我们发现与野生型相比,rid1-1突变在种子萌发过程中并未显著改变全基因组的可变剪接模式。进一步的证据表明,RID1通过与SKIP相关转录复合体进行物理和遗传相互作用,经由脱落酸(ABA)途径调控种子萌发。这些结果表明,RID1在转录水平而非通过可变剪接调控来响应环境温度从而调节种子萌发。本研究为种子萌发调控机制提供了新的见解。

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本文引用的文献

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Molecular mechanisms underlying the signal perception and transduction during seed germination.种子萌发过程中信号感知与转导的分子机制。
Mol Breed. 2024 Mar 20;44(4):27. doi: 10.1007/s11032-024-01465-w. eCollection 2024 Apr.
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Endospermic brassinosteroids moderate seed thermoinhibition responses in Arabidopsis thaliana.胚乳中的油菜素类固醇调节拟南芥种子的热抑制反应。
New Phytol. 2024 Mar;241(6):2320-2325. doi: 10.1111/nph.19491. Epub 2023 Dec 21.
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The Arabidopsis endosperm is a temperature-sensing tissue that implements seed thermoinhibition through phyB.
拟南芥胚乳是一种温度感应组织,通过 phyB 实现种子热抑制。
Nat Commun. 2023 Mar 7;14(1):1202. doi: 10.1038/s41467-023-36903-4.
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Coordinated histone variant H2A.Z eviction and H3.3 deposition control plant thermomorphogenesis.协调组蛋白变体 H2A.Z 的驱逐和 H3.3 的沉积控制植物热形态发生。
New Phytol. 2023 Apr;238(2):750-764. doi: 10.1111/nph.18738. Epub 2023 Feb 18.
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Functions and mechanisms of RNA helicases in plants.植物中 RNA 解旋酶的功能和机制。
J Exp Bot. 2023 Apr 9;74(7):2295-2310. doi: 10.1093/jxb/erac462.
6
XAP5 CIRCADIAN TIMEKEEPER specifically modulates 3' splice site recognition and is important for circadian clock regulation partly by alternative splicing of LHY and TIC.XAP5 生物钟节律蛋白特异性调节 3' 剪接位点识别,通过 LHY 和 TIC 的可变剪接对生物钟节律调控起重要作用。
Plant Physiol Biochem. 2022 Feb 1;172:151-157. doi: 10.1016/j.plaphy.2022.01.013. Epub 2022 Jan 19.
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Seed germination and vigor: ensuring crop sustainability in a changing climate.种子萌发与活力:确保气候变化下的作物可持续性。
Heredity (Edinb). 2022 Jun;128(6):450-459. doi: 10.1038/s41437-022-00497-2. Epub 2022 Jan 10.
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New Phytol. 2019 Oct;224(1):321-335. doi: 10.1111/nph.15990. Epub 2019 Jul 10.
9
CASH: a constructing comprehensive splice site method for detecting alternative splicing events.CASH:一种构建综合剪接位点的方法,用于检测可变剪接事件。
Brief Bioinform. 2018 Sep 28;19(5):905-917. doi: 10.1093/bib/bbx034.
10
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