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根结线虫的基因组草图组装

Draft Genome Assembly of Root Knot Nematode, .

作者信息

Griffin Sarah Olivia, Orlando Valeria, Conyers Chris, Lawson Rebecca, Prior Thomas, Jones Eleanor, Haynes Edward, Jensen Evelyn L

机构信息

School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.

Fera Science Ltd., York Biotech Campus, York, YO41 1LZ, UK.

出版信息

J Nematol. 2025 Apr 16;57(1):20250016. doi: 10.2478/jofnem-2025-0016. eCollection 2025 Feb.

Abstract

(false Columbia root knot nematode) is an invasive crop pest recorded across Europe, Africa, North America, and Oceania. Here we present the draft genome assembly of which was de novo assembled and scaffolded using (Columbia root knot nematode), a close relative of .

摘要

(伪哥伦比亚根结线虫)是一种在欧洲、非洲、北美洲和大洋洲均有记录的入侵性作物害虫。在此,我们展示了 的基因组草图组装结果,该结果是使用 (哥伦比亚根结线虫)进行从头组装和构建支架的, 是 的近亲。

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本文引用的文献

1
SeqKit2: A Swiss army knife for sequence and alignment processing.
Imeta. 2024 Apr 5;3(3):e191. doi: 10.1002/imt2.191. eCollection 2024 Jun.
4
BUSCO: Assessing Genomic Data Quality and Beyond.
Curr Protoc. 2021 Dec;1(12):e323. doi: 10.1002/cpz1.323.
5
Prowler: a novel trimming algorithm for Oxford Nanopore sequence data.
Bioinformatics. 2021 Nov 5;37(21):3936-3937. doi: 10.1093/bioinformatics/btab630.
7
RepeatModeler2 for automated genomic discovery of transposable element families.
Proc Natl Acad Sci U S A. 2020 Apr 28;117(17):9451-9457. doi: 10.1073/pnas.1921046117. Epub 2020 Apr 16.
8
Improved metagenomic analysis with Kraken 2.
Genome Biol. 2019 Nov 28;20(1):257. doi: 10.1186/s13059-019-1891-0.

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