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极度濒危的亚洲王鹫(Sarcoramphus coronatus)(鸟类,鹰形目,鹰科)的完整线粒体基因组:进化见解与比较分析

Complete mitogenome of the critically endangered Asian king vulture () (Aves, Accipitriformes, Accipitridae): evolutionary insights and comparative analysis.

作者信息

Buthasane Wannapol, Tangphatsornruang Sithichoke, Jenjaroenpun Piroon, Wongsurawat Thidathip, Sanannu Saowaphang, Shotelersuk Vorasuk, Suriyaphol Gunnaporn

机构信息

Biochemistry Unit, Department of Physiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok 10330, Thailand.

National Omics Center, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, Pathum Thani 12120, Thailand.

出版信息

Zookeys. 2025 Apr 8;1234:47-65. doi: 10.3897/zookeys.1234.138722. eCollection 2025.

Abstract

The Asian king vulture (), also known as the red-headed vulture, is an Old World vulture (Gypini) facing severe population declines. This study aimed to assemble the complete mitogenome of , explore its phylogenetic relationships, estimate divergence times, and examine genetic distances and amino acid substitutions. The mitogenome was de novo assembled from genomic DNA extracted from the blood of a female . Phylogenetic and pairwise genetic distance analyses were conducted, comparing with other members of Gypini, New World vultures (Cathartidae) and various other birds. The assembled mitogenome was 17,750 base pairs in length, comprising 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and two control regions. Most PCGs used the ATG start codon, except for cytochrome c oxidase subunit 1 (), which employed GTG. Phylogenetic analysis revealed a close genetic relationship between and other members of Gypini, with an estimated divergence time of 16.7 million years ago. Genetic distance analysis indicated that was more closely related to other Gypini, as well as to and (Circaetini)), than to Cathartidae. Conserved amino acid substitutions between Gypini and Cathartidae were primarily observed in the NADH-ubiquinone oxidoreductase chain 1 () gene. This study provided the first complete mitogenome of , offering new insights into its genomic structure, evolutionary history, and genetic relationships.

摘要

亚洲王兀鹫(又称红头兀鹫)是一种旧大陆兀鹫(兀鹫属),其种群数量正急剧下降。本研究旨在组装亚洲王兀鹫的完整线粒体基因组,探索其系统发育关系,估计分歧时间,并检测遗传距离和氨基酸替换。线粒体基因组是从一只雌性亚洲王兀鹫血液中提取的基因组DNA进行从头组装得到的。进行了系统发育和成对遗传距离分析,将亚洲王兀鹫与兀鹫属的其他成员、新大陆兀鹫(美洲鹫科)以及其他各种鸟类进行比较。组装的线粒体基因组长度为17750个碱基对,包括13个蛋白质编码基因(PCGs)、22个转运RNA基因、两个核糖体RNA基因和两个控制区。除细胞色素c氧化酶亚基1(COX1)使用GTG作为起始密码子外,大多数PCGs使用ATG作为起始密码子。系统发育分析表明,亚洲王兀鹫与兀鹫属的其他成员存在密切的遗传关系,估计分歧时间为1670万年前。遗传距离分析表明,亚洲王兀鹫与其他兀鹫属成员以及与短趾雕属(短趾雕亚科)和蛇雕属(蛇雕亚科)的关系比与美洲鹫科的关系更密切。兀鹫属和美洲鹫科之间保守的氨基酸替换主要出现在NADH泛醌氧化还原酶链1(ND1)基因中。本研究提供了亚洲王兀鹫的首个完整线粒体基因组,为其基因组结构、进化历史和遗传关系提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/17f0/12000817/49eb4c3e550c/zookeys-1234-047_article-138722__-g001.jpg

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