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鉴定不同病因急性肺损伤中与铁死亡相关的共同重要基因。

Identification of shared important genes associated with ferroptosis across different etiologies of acute lung injury.

作者信息

Li Jing, Yang Yanming, Cui Zhengjun

机构信息

Department of Burns and Reconstructive Surgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, China.

Emergency Surgery, Xinxiang Central Hospital, Xinxiang, 453000, China.

出版信息

Sci Rep. 2025 Apr 19;15(1):13561. doi: 10.1038/s41598-025-98936-7.

Abstract

Acute lung injury (ALI) of different etiologies has shared pathophysiologic process, from which we speculated that ALI of different etiologies may share common molecular features. While the shared genetic characteristics of ALI remain unclear. In this paper, we aimed to identify shared ferroptosis-associated and bottleneck genes from acute lung injury of different etiologies. Firstly, we extracted five groups of gene sets related to three distinct models of ALI from the Gene Expression Omnibus (GEO) database. Then, through the utilization of weighted gene co-expression network analysis (WGCNA), we identified 3 significant gene modules and ascertained 7 shared co-expressed genes affected by these models. Subsequently, through the utilization of differential gene expression analysis and protein-protein interaction network analysis for the 3 gene modules, the shared bottleneck gene Slc7a11 was identified. Moreover, the 7 shared co-expressed genes subjected to these three ALI models were used to identify shared ferroptosis-associated genes via the FerrDb database. Finally, the key gene Slc7a11 was confirmed and validated. In addition, we observed that Slc7a11 is both a driver and a suppressor gene in the FerrDb database. Interestingly, we found the expression level of Slc7a11 was significantly upregulated in the three ALI models. Experimentally, we confirmed the expression of Slc7a11 in rat ALI tissues by using immunofluorescence staining and real-time polymerase chain reaction (qRT-PCR) assays. Collectively, our findings complement the exploration of the shared pathogenesis of ALI. There are genetic features shared by ALI of different etiology and the increased expression of Slc7a11 was identified in the three different etiologies of ALI, which can improve our understanding of the shared molecular mechanisms underlying ALI.

摘要

不同病因的急性肺损伤(ALI)具有共同的病理生理过程,由此我们推测不同病因的ALI可能具有共同的分子特征。然而,ALI的共同遗传特征仍不清楚。在本文中,我们旨在从不同病因的急性肺损伤中鉴定出与铁死亡相关的共同瓶颈基因。首先,我们从基因表达综合数据库(GEO)中提取了与三种不同ALI模型相关的五组基因集。然后,通过加权基因共表达网络分析(WGCNA),我们确定了3个重要的基因模块,并确定了受这些模型影响的7个共同共表达基因。随后,通过对这3个基因模块进行差异基因表达分析和蛋白质-蛋白质相互作用网络分析,鉴定出共同的瓶颈基因Slc7a11。此外,利用这三种ALI模型的7个共同共表达基因,通过FerrDb数据库鉴定出与铁死亡相关的共同基因。最后,对关键基因Slc7a11进行了确认和验证。此外,我们观察到Slc7a11在FerrDb数据库中既是驱动基因又是抑制基因。有趣的是,我们发现Slc7a11在三种ALI模型中的表达水平均显著上调。通过实验,我们利用免疫荧光染色和实时聚合酶链反应(qRT-PCR)检测法证实了Slc7a11在大鼠ALI组织中的表达。总的来说,我们的研究结果补充了对ALI共同发病机制的探索。不同病因的ALI存在共同的遗传特征,并且在三种不同病因的ALI中均发现Slc7a11表达增加,这有助于我们更好地理解ALI潜在的共同分子机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a50/12009320/4b4e4dd52d97/41598_2025_98936_Fig1_HTML.jpg

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