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鳉鱼中依赖生活史的脑转录组特征:对衰老、神经发生和生活史进化的见解

Life History-Dependent Brain Transcriptomic Signatures in Nothobranchids: Insights into Aging, Neurogenesis, and Life History Evolution.

作者信息

Leow C J, Piller K R

机构信息

Department of Biological Sciences, Southeastern Louisiana University, Hammond, LA 70402, USA.

出版信息

Integr Org Biol. 2025 Apr 17;7(1):obaf016. doi: 10.1093/iob/obaf016. eCollection 2025.

DOI:10.1093/iob/obaf016
PMID:40271120
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12015474/
Abstract

The African turquoise killifish is a powerful model organism in aging research. Within the family Nothobranchiidae, a wide range of lifespan is observed in annual, semi-annual, and non-annual life histories. In this study, we examined the brain transcriptomic signatures of adult nothobranchids across life history variations. Our results show that the brain gene expression profiles exhibit strong life history signatures compared to the liver tissue. Semi-annual species shows upregulation in cell division and mitosis compared to non-annual species. We identified genes related to neurogenesis such as , , and that show downregulation in the short-lived annual species compared to other life histories. The Notch signaling pathway is enriched in the non-annual species suggesting the importance of this pathway in longer-lived killifish. Our study demonstrates that other non-model nothobranchids can be used as comparative species to   in the study of aging, neurogenesis, and life history.

摘要

非洲 turquoise 鳉是衰老研究中一种强大的模式生物。在假鳃鳉科中,一年生、半年生和非一年生的生活史呈现出广泛的寿命范围。在本研究中,我们研究了不同生活史的成年假鳃鳉的脑转录组特征。我们的结果表明,与肝脏组织相比,脑基因表达谱呈现出强烈的生活史特征。与非一年生物种相比,半年生物种在细胞分裂和有丝分裂方面表现出上调。我们鉴定出了与神经发生相关的基因,如 、 和 ,这些基因在短命的一年生物种中与其他生活史相比呈现出下调。Notch 信号通路在非一年生物种中富集,表明该通路在寿命更长的鳉鱼中的重要性。我们的研究表明,其他非模式假鳃鳉可以用作比较物种,用于衰老、神经发生和生活史的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/424d54be8314/obaf016fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/033aa99873ff/obaf016fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/2a526600f91f/obaf016fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/fdf0a402ba20/obaf016fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/1763ef981efb/obaf016fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/3fb9d379599b/obaf016fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/70fbcc51af1d/obaf016fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/424d54be8314/obaf016fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/033aa99873ff/obaf016fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/2a526600f91f/obaf016fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/fdf0a402ba20/obaf016fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/1763ef981efb/obaf016fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/3fb9d379599b/obaf016fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/70fbcc51af1d/obaf016fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b664/12015474/424d54be8314/obaf016fig7.jpg

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本文引用的文献

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Transcriptomic data support phylogenetic congruence and reveal genomic changes associated with the repeated evolution of annualism in aplocheiloid killifishes (Cyprinodontiformes).转录组数据支持系统发育一致性,并揭示与脂鲤目(鲤形目)中一年生鱼类的重复进化相关的基因组变化。
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2
Life in the fastlane? A comparative analysis of gene expression profiles across annual, semi-annual, and non-annual killifishes (Cyprinodontiformes: Nothobranchiidae).生活在快车道上?年度、半年度和非年度食蚊鱼(鲤形目:花鳉科)的基因表达谱比较分析。
PLoS One. 2024 Sep 10;19(9):e0308855. doi: 10.1371/journal.pone.0308855. eCollection 2024.
3
Single-cell sequencing unveils the impact of aging on the progenitor cell diversity in the telencephalon of the female killifish N. furzeri.
单细胞测序揭示了衰老对雌性食蚊鱼 N. furzeri 端脑祖细胞多样性的影响。
Aging Cell. 2024 Oct;23(10):e14251. doi: 10.1111/acel.14251. Epub 2024 Jul 1.
4
Is African non-annual killifish Fundulopanchax gardneri (Teleostei; Cyprinodontiformes; Nothobranchiidae) true non-annual?非洲非一年生鳉鱼加德纳底鳉(硬骨鱼纲;鲤齿目;假鳃鳉科)真的是非一年生的吗?
Dev Dyn. 2024 May;253(5):490-507. doi: 10.1002/dvdy.668. Epub 2023 Oct 19.
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Turquoise killifish: A natural model of age-dependent brain degeneration.蓝腮太阳鱼:一种与年龄相关的大脑退化的天然模型。
Ageing Res Rev. 2023 Sep;90:102019. doi: 10.1016/j.arr.2023.102019. Epub 2023 Jul 22.
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Notch signaling as a master regulator of adult neurogenesis.Notch信号通路作为成体神经发生的主要调节因子。
Front Neurosci. 2023 Jun 29;17:1179011. doi: 10.3389/fnins.2023.1179011. eCollection 2023.
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RNAseq Analysis of Brain Aging in Wild Specimens of Short-Lived Turquoise Killifish: Commonalities and Differences With Aging Under Laboratory Conditions.野生短生命周期的青鳉鱼大脑衰老的 RNAseq 分析:实验室条件下衰老的共性和差异。
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The killifish visual system as an in vivo model to study brain aging and rejuvenation.将鳉鱼视觉系统作为研究大脑衰老和恢复活力的体内模型。
NPJ Aging Mech Dis. 2021 Aug 17;7(1):22. doi: 10.1038/s41514-021-00077-4.
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