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通过虚拟筛选、计算机辅助ADMET评估和分子动力学模拟研究探索刺桐属黄酮类化合物作为潜在的SARS-CoV-2 RdRp抑制剂。

Exploring Erythrina flavonoids as potential SARS-CoV-2 RdRp inhibitors through virtual screening, in silico ADMET evaluation, and molecular dynamics simulation studies.

作者信息

Herlina Tati, Nishinarizki Vicki, Akili Abd Wahid Rizaldi, Hardianto Ari, Gaffar Shabarni, Muchtaridi Muchtaridi, Latip Jalifah

机构信息

Department of Chemistry, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor, 45363, West Java, Indonesia.

Faculty of Pharmacy, Universitas Padjadjaran, Jatinangor, 45363, West Java, Indonesia.

出版信息

Sci Rep. 2025 Apr 24;15(1):14259. doi: 10.1038/s41598-025-97311-w.

DOI:10.1038/s41598-025-97311-w
PMID:40274940
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12022342/
Abstract

The COVID-19 pandemic, caused by SARS-CoV-2, has intensified the search for effective antiviral agents. This study investigates the inhibitory potential of 473 flavonoids from the genus Erythrina against the key enzyme of SARS-CoV-2, RNA-dependent RNA polymerase (RdRp). Virtual screening campaign using molecular docking identified 128 flavonoids with stronger binding energies to RdRp than remdesivir, a WHO-endorsed drug. Lipinski's Rule of Five and ADMET profiling suggested butein (119) as the promising RdRp inhibitor. Moreover, molecular dynamics simulations revealed that 119 binds effectively to RdRp and interacts with the RNA template and primer, suggesting a multi-faceted inhibitory mechanism. Our findings highlight the potential of Erythrina-derived flavonoids, particularly compound 119, as potent RdRp inhibitors, warranting further experimental studies.

摘要

由严重急性呼吸综合征冠状病毒2(SARS-CoV-2)引起的2019冠状病毒病(COVID-19)大流行,加剧了对有效抗病毒药物的搜寻。本研究调查了刺桐属473种黄酮类化合物对SARS-CoV-2关键酶——RNA依赖性RNA聚合酶(RdRp)的抑制潜力。使用分子对接的虚拟筛选活动确定了128种黄酮类化合物,它们与RdRp的结合能比世界卫生组织认可的药物瑞德西韦更强。Lipinski五规则和药物代谢及毒性预测分析表明,没食子酸(119)是有前景的RdRp抑制剂。此外,分子动力学模拟显示,119能有效结合到RdRp上,并与RNA模板和引物相互作用,提示其具有多方面的抑制机制。我们的研究结果突出了刺桐属来源的黄酮类化合物,特别是化合物119作为有效的RdRp抑制剂的潜力,值得进一步开展实验研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/8f62bbcc276f/41598_2025_97311_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/280d674ed29b/41598_2025_97311_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/80162d82c37d/41598_2025_97311_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/9515fbf00139/41598_2025_97311_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/4a19c80ac50b/41598_2025_97311_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/1c3833e9f0d7/41598_2025_97311_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/8f62bbcc276f/41598_2025_97311_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/280d674ed29b/41598_2025_97311_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/4f599af4f0a4/41598_2025_97311_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/5f92e15d31d7/41598_2025_97311_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/80162d82c37d/41598_2025_97311_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/9515fbf00139/41598_2025_97311_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/4a19c80ac50b/41598_2025_97311_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/1c3833e9f0d7/41598_2025_97311_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6271/12022342/8f62bbcc276f/41598_2025_97311_Fig8_HTML.jpg

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