• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过祖先序列重建探索海氏栖硅菌转氨酶的稳定性和底物谱。

Exploring the Stability and Substrate Profile of Transaminase from Silicibacter pomeroyi with Ancestral Sequence Reconstruction.

作者信息

Zhao Luyao, Thongrakon Bhu-Bhud, Gautom Trishnamoni, Sahlberg Viktor, Berglund Per

机构信息

Department of Industrial Biotechnology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, SE-10691, Stockholm, Sweden.

出版信息

Chembiochem. 2025 Jul 11;26(13):e202500155. doi: 10.1002/cbic.202500155. Epub 2025 May 30.

DOI:10.1002/cbic.202500155
PMID:40279196
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12247033/
Abstract

Amine transaminases (ATAs), belonging to the class III transaminases within the superfamily of pyridoxal-5'-phosphate-dependent enzymes, catalyze transamination reactions between amino donors and amino acceptors. These enzymes are particularly appealing for their role in stereospecific synthesis of chiral amines. However, the stability of most ATAs is not satisfying, limiting their suitability for industrial applications. Among them, the amine transaminase from Silicibacter pomeroyi (Sp-ATA) has drawn attention due to its high activity and broad substrate scope under mild conditions and high pH. Nevertheless, maintaining the activity at higher temperatures is a challenge. Previous studies to enhance enzyme function through directed evolution have shown promising results, yet predicting the cooperative effects of individual stabilizing mutations remains challenging. An alternative strategy is ancestral sequence reconstruction (ASR), which is based on gene sequences to create a more or less artificial phylogenetic tree. This study aims to leverage ASR techniques to explore the thermostability, solvent tolerance, and substrate profile of Sp-ATA, to find more stable transaminases. By using Sp-ATA as a template and incorporating insights from ancestral sequences, this strategy offers a promising approach for developing robust biocatalysts suitable for industrial applications.

摘要

胺转氨酶(ATA)属于磷酸吡哆醛依赖性酶超家族中的III类转氨酶,催化氨基供体和氨基受体之间的转氨反应。这些酶因其在手性胺的立体特异性合成中的作用而特别具有吸引力。然而,大多数ATA的稳定性并不令人满意,限制了它们在工业应用中的适用性。其中,来自波氏硅杆菌的胺转氨酶(Sp-ATA)因其在温和条件和高pH下具有高活性和广泛的底物范围而受到关注。然而,在较高温度下保持活性是一项挑战。先前通过定向进化增强酶功能的研究已显示出有希望的结果,但预测单个稳定突变的协同效应仍然具有挑战性。另一种策略是祖先序列重建(ASR),它基于基因序列创建一个或多或少的人工系统发育树。本研究旨在利用ASR技术探索Sp-ATA的热稳定性、耐溶剂性和底物谱,以找到更稳定的转氨酶。通过以Sp-ATA为模板并结合祖先序列的见解,该策略为开发适用于工业应用的强大生物催化剂提供了一种有前途的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/c1a937e8d870/CBIC-26-e202500155-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/35023e2786c6/CBIC-26-e202500155-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/070b2e68301b/CBIC-26-e202500155-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/1008c4eda6d3/CBIC-26-e202500155-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/48e0312094d8/CBIC-26-e202500155-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/370972dde020/CBIC-26-e202500155-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/c4702c57ffd2/CBIC-26-e202500155-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/51206084d03b/CBIC-26-e202500155-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/c1a937e8d870/CBIC-26-e202500155-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/35023e2786c6/CBIC-26-e202500155-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/070b2e68301b/CBIC-26-e202500155-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/1008c4eda6d3/CBIC-26-e202500155-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/48e0312094d8/CBIC-26-e202500155-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/370972dde020/CBIC-26-e202500155-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/c4702c57ffd2/CBIC-26-e202500155-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/51206084d03b/CBIC-26-e202500155-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0218/12247033/c1a937e8d870/CBIC-26-e202500155-g004.jpg

相似文献

1
Exploring the Stability and Substrate Profile of Transaminase from Silicibacter pomeroyi with Ancestral Sequence Reconstruction.通过祖先序列重建探索海氏栖硅菌转氨酶的稳定性和底物谱。
Chembiochem. 2025 Jul 11;26(13):e202500155. doi: 10.1002/cbic.202500155. Epub 2025 May 30.
2
Management of urinary stones by experts in stone disease (ESD 2025).结石病专家对尿路结石的管理(2025年结石病专家共识)
Arch Ital Urol Androl. 2025 Jun 30;97(2):14085. doi: 10.4081/aiua.2025.14085.
3
Short-Term Memory Impairment短期记忆障碍
4
[Volume and health outcomes: evidence from systematic reviews and from evaluation of Italian hospital data].[容量与健康结果:来自系统评价和意大利医院数据评估的证据]
Epidemiol Prev. 2013 Mar-Jun;37(2-3 Suppl 2):1-100.
5
Sexual Harassment and Prevention Training性骚扰与预防培训
6
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.系统性药理学治疗慢性斑块状银屑病:网络荟萃分析。
Cochrane Database Syst Rev. 2021 Apr 19;4(4):CD011535. doi: 10.1002/14651858.CD011535.pub4.
7
The Black Book of Psychotropic Dosing and Monitoring.《精神药物剂量与监测黑皮书》
Psychopharmacol Bull. 2024 Jul 8;54(3):8-59.
8
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.慢性斑块状银屑病的全身药理学治疗:一项网状Meta分析。
Cochrane Database Syst Rev. 2020 Jan 9;1(1):CD011535. doi: 10.1002/14651858.CD011535.pub3.
9
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.慢性斑块状银屑病的全身药理学治疗:一项网状荟萃分析。
Cochrane Database Syst Rev. 2017 Dec 22;12(12):CD011535. doi: 10.1002/14651858.CD011535.pub2.
10
Does Augmenting Irradiated Autografts With Free Vascularized Fibula Graft in Patients With Bone Loss From a Malignant Tumor Achieve Union, Function, and Complication Rate Comparably to Patients Without Bone Loss and Augmentation When Reconstructing Intercalary Resections in the Lower Extremity?对于因恶性肿瘤导致骨缺损的患者,在重建下肢节段性切除时,采用带血管游离腓骨移植来增强照射后的自体骨移植,其骨愈合、功能及并发症发生率与无骨缺损且未进行增强的患者相比是否相当?
Clin Orthop Relat Res. 2025 Jun 26. doi: 10.1097/CORR.0000000000003599.

本文引用的文献

1
Ancestral Sequence Reconstruction for Designing Biocatalysts and Investigating their Functional Mechanisms.用于设计生物催化剂及其功能机制研究的祖先序列重建
JACS Au. 2024 Oct 25;4(12):4571-4591. doi: 10.1021/jacsau.4c00653. eCollection 2024 Dec 23.
2
InterPro: the protein sequence classification resource in 2025.InterPro:2025年的蛋白质序列分类资源。
Nucleic Acids Res. 2025 Jan 6;53(D1):D444-D456. doi: 10.1093/nar/gkae1082.
3
Biocatalytic reductive aminations with NAD(P)H-dependent enzymes: enzyme discovery, engineering and synthetic applications.
利用 NAD(P)H 依赖型酶的生物催化还原胺化反应:酶的发现、工程改造及合成应用。
Chem Soc Rev. 2024 Jan 2;53(1):227-262. doi: 10.1039/d3cs00391d.
4
Cellulase immobilization to enhance enzymatic hydrolysis of lignocellulosic biomass: An all-inclusive review.固定化纤维素酶以增强木质纤维素生物质的酶水解:全面综述。
Carbohydr Polym. 2023 Dec 1;321:121319. doi: 10.1016/j.carbpol.2023.121319. Epub 2023 Aug 22.
5
Engineering functional thermostable proteins using ancestral sequence reconstruction.利用祖先序列重建工程功能稳定的蛋白质。
J Biol Chem. 2022 Oct;298(10):102435. doi: 10.1016/j.jbc.2022.102435. Epub 2022 Aug 27.
6
Characterization of proteins from the 3N5M family reveals an operationally stable amine transaminase.从 3N5M 家族的蛋白质特征揭示了一种具有稳定操作性的胺转氨酶。
Appl Microbiol Biotechnol. 2022 Sep;106(17):5563-5574. doi: 10.1007/s00253-022-12071-1. Epub 2022 Aug 6.
7
Biocatalysis: A smart and green tool for the preparation of chiral drugs.生物催化:手性药物制备的明智绿色工具。
Chirality. 2022 Nov;34(11):1403-1418. doi: 10.1002/chir.23498. Epub 2022 Aug 5.
8
Thermal stability enhancement: Fundamental concepts of protein engineering strategies to manipulate the flexible structure.热稳定性增强:蛋白质工程策略操纵柔性结构的基本概念。
Int J Biol Macromol. 2022 Aug 1;214:642-654. doi: 10.1016/j.ijbiomac.2022.06.154. Epub 2022 Jun 27.
9
Active pharmaceutical ingredient (API) chemicals: a critical review of current biotechnological approaches.原料药(API)化学品:当前生物技术方法的批判性回顾。
Bioengineered. 2022 Feb;13(2):4309-4327. doi: 10.1080/21655979.2022.2031412.
10
Shortening Synthetic Routes to Small Molecule Active Pharmaceutical Ingredients Employing Biocatalytic Methods.采用生物催化方法缩短小分子活性药物成分的合成路线。
Chem Rev. 2022 Jan 12;122(1):1052-1126. doi: 10.1021/acs.chemrev.1c00574. Epub 2021 Nov 30.