Suppr超能文献

通过泛素结合酶E2A/B对组蛋白H2B进行泛素化修饰,底物硬度对基因表达的调控

Modulation of Gene Expression by Substrate Stiffness via Ubiquitination of Histone H2B by Ubiquitin-Conjugating Enzyme E2A/B.

作者信息

Feng Mingwei, Nakamura Fumihiko

机构信息

School of Pharmaceutical Science and Technology, Tianjin University, 92 Weijin Road, Nankai District, Tianjin 300072, China.

出版信息

ACS Omega. 2025 Apr 9;10(15):15799-15809. doi: 10.1021/acsomega.5c02459. eCollection 2025 Apr 22.

Abstract

Animal cells adapt to the stiffness of their environment through mechanotransduction, a process in which mechanical signals are converted into biochemical responses, influencing key cellular processes such as growth and differentiation. We identified ubiquitin-conjugating enzymes E2 A and B (UBE2A/B) as mechanosensitive proteins that translocate between the nucleus and cytoplasm depending on force and substrate stiffness. Here, we hypothesized that UBE2A/B nuclear translocation on stiff substrates triggers gene expression via UBE2A/B-mediated ubiquitination of histone H2B lysine 120 (H2BK120). Chromatin immunoprecipitation sequencing (ChIP-seq) revealed distinct DNA fragments bound to monoubiquitinated H2B in cells cultured on soft (0.2 kPa) versus stiff (64 kPa) substrates. We identified 2245 gene regions binding to ubiquitinated histones on stiff substrates and 294 on soft substrates and further integrated RNA-seq and UBE2A/B knockdown data to pinpoint 179 stiff-specific and 18 soft-specific genes. Among these, filamin C (FLNC), leucine zipper protein 1 (LUZP1), and glutamate-rich WD repeat-containing protein 1 (GRWD1) showed higher expression on stiff substrates, with GRWD1 known for its role in cancer progression through cell cycle and gene regulation. These findings highlight how substrate stiffness modulates gene expression via UBE2A/B-mediated H2B ubiquitination.

摘要

动物细胞通过机械转导适应其周围环境的硬度,在这个过程中,机械信号被转化为生化反应,影响诸如生长和分化等关键细胞过程。我们鉴定出泛素结合酶E2 A和B(UBE2A/B)是机械敏感蛋白,它们会根据力和底物硬度在细胞核和细胞质之间转运。在这里,我们假设在坚硬底物上UBE2A/B的核转位通过UBE2A/B介导的组蛋白H2B赖氨酸120(H2BK120)泛素化触发基因表达。染色质免疫沉淀测序(ChIP-seq)揭示了在软(0.2千帕)与硬(64千帕)底物上培养的细胞中与单泛素化H2B结合的不同DNA片段。我们在硬底物上鉴定出2245个与泛素化组蛋白结合的基因区域,在软底物上鉴定出294个,并进一步整合RNA-seq和UBE2A/B敲低数据以确定179个硬特异性基因和18个软特异性基因。其中,细丝蛋白C(FLNC)、亮氨酸拉链蛋白1(LUZP1)和富含谷氨酸的含WD重复蛋白1(GRWD1)在硬底物上表达较高,已知GRWD1通过细胞周期和基因调控在癌症进展中发挥作用。这些发现突出了底物硬度如何通过UBE2A/B介导的H2B泛素化调节基因表达。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f53f/12019518/0cc22e8543a6/ao5c02459_0001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验