亚群BE1噬菌体柿子的全基因组序列
Whole-genome sequence of subcluster BE1 bacteriophage Persimmon.
作者信息
Li Wanji, Shang Meiru, Weston Hafer Kathleen, Shaffer Christopher D
机构信息
Department of Biology, Washington University in St Louis, St. Louis, Missouri, USA.
出版信息
Microbiol Resour Announc. 2025 Jun 12;14(6):e0002425. doi: 10.1128/mra.00024-25. Epub 2025 Apr 29.
Abstract
Persimmon is a BE1 subcluster bacteriophage infecting with siphoviral morphology and was isolated from a soil sample. The genome of Persimmon has a length of 131,421 bp, 231 protein-coding genes, and a 50.0% GC content that differs from the isolation host with high GC content.
摘要
柿噬菌体是一种感染性的BE1亚群噬菌体，具有长尾病毒形态，从土壤样本中分离得到。柿噬菌体的基因组长度为131,421碱基对，有231个蛋白质编码基因，GC含量为50.0%，这与高GC含量的分离宿主不同。
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本文引用的文献
1
PhamClust: a phage genome clustering tool using proteomic equivalence.
mSystems. 2023 Oct 26;8(5):e0044323. doi: 10.1128/msystems.00443-23. Epub 2023 Oct 4.
2
Database resources of the national center for biotechnology information.
Nucleic Acids Res. 2022 Jan 7;50(D1):D20-D26. doi: 10.1093/nar/gkab1112.
3
Construction of a new integrating vector from actinophage ϕOZJ and its use in multiplex Streptomyces transformation.
J Ind Microbiol Biotechnol. 2020 Jan;47(1):73-81. doi: 10.1007/s10295-019-02246-7. Epub 2019 Nov 8.
4
Streptomyces protein secretion and its application in biotechnology.
FEMS Microbiol Lett. 2018 Nov 1;365(22). doi: 10.1093/femsle/fny250.
5
Eight Genome Sequences of Cluster BE1 Phages That Infect Species.
Genome Announc. 2018 Jan 11;6(2):e01146-17. doi: 10.1128/genomeA.01146-17.
6
PhagesDB: the actinobacteriophage database.
Bioinformatics. 2017 Mar 1;33(5):784-786. doi: 10.1093/bioinformatics/btw711.
7
Establishing a high yielding streptomyces-based cell-free protein synthesis system.
Biotechnol Bioeng. 2017 Jun;114(6):1343-1353. doi: 10.1002/bit.26253. Epub 2017 Feb 23.
8
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.
Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7. doi: 10.1093/nar/gkw413. Epub 2016 May 12.
9
A century of the phage: past, present and future.
Nat Rev Microbiol. 2015 Dec;13(12):777-86. doi: 10.1038/nrmicro3564. Epub 2015 Nov 9.
10
Complete genome sequence of Streptomyces lividans TK24.
J Biotechnol. 2015 Apr 10;199:21-2. doi: 10.1016/j.jbiotec.2015.02.004. Epub 2015 Feb 11.
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