从柑橘和咖啡中分离出的三个亚种菌株的基因组序列草图。
Draft genome sequences of three subsp. strains isolated from citrus and coffee.
作者信息
Rogers Elizabeth E, Sechler Aaron J
机构信息
USDA, ARS, Foreign Disease Weed Science Research Unit, Ft. Detrick, Frederick, Maryland, USA.
出版信息
Microbiol Resour Announc. 2025 Jun 12;14(6):e0104624. doi: 10.1128/mra.01046-24. Epub 2025 Apr 30.
Abstract
is a xylem-limited plant pathogen infecting more than 100 species of plants. Here we present draft genomes of three subsp. strains. These strains are a resource for studying citrus variegated chlorosis and coffee leaf scorch, which are readily available to the international scientific community.
摘要
是一种局限于木质部的植物病原体，可感染100多种植物。在此，我们展示了三个亚种菌株的基因组草图。这些菌株是用于研究柑橘杂色黄化病和咖啡叶焦病的资源，国际科学界可轻松获取这些菌株。
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本文引用的文献
1
Updated pest categorisation of .
EFSA J. 2018 Jul 23;16(7):e05357. doi: 10.2903/j.efsa.2018.5357. eCollection 2018 Jul.
2
High-Quality Draft Genome Sequence Resources of Eight Strains Isolated from Citrus, Coffee, Plum, and Hibiscus in South America.
Phytopathology. 2020 Nov;110(11):1751-1755. doi: 10.1094/PHYTO-05-20-0162-A. Epub 2020 Sep 10.
3
Xylella fastidiosa: Insights into an Emerging Plant Pathogen.
Annu Rev Phytopathol. 2018 Aug 25;56:181-202. doi: 10.1146/annurev-phyto-080417-045849. Epub 2018 Jun 11.
4
Isolation and pathogenicity of Xylella fastidiosa associated to the olive quick decline syndrome in southern Italy.
Sci Rep. 2017 Dec 18;7(1):17723. doi: 10.1038/s41598-017-17957-z.
5
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
6
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
7
The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae.
BMC Genomics. 2009 Dec 17;10:616. doi: 10.1186/1471-2164-10-616.
8
BLAST+: architecture and applications.
BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421.
9
Xylella fastidiosa subspecies: X. fastidiosa subsp. [correction] fastidiosa [correction] subsp. nov., X. fastidiosa subsp. multiplex subsp. nov., and X. fastidiosa subsp. pauca subsp. nov.
Syst Appl Microbiol. 2004 May;27(3):290-300. doi: 10.1078/0723-2020-00263.
10
The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis.
Nature. 2000 Jul 13;406(6792):151-9. doi: 10.1038/35018003.
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