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通过细胞表面重塑对细胞表面蛋白进行邻近标记

Proximity Labeling of Cell Surface Proteins via Cell Surface Remodeling.

作者信息

Vilen Zak, Pang Jia Meng, Huang Mia L

机构信息

Skaggs Graduate School of Chemical and Biological Sciences, Scripps Research, La Jolla, CA, USA.

Department of Chemistry, Scripps Research, La Jolla, CA, USA.

出版信息

Methods Mol Biol. 2025;2908:33-50. doi: 10.1007/978-1-0716-4434-8_3.

Abstract

Within the complex interplay of proteins, lipids and carbohydrates at the cell surface is the surfaceome, a dense layer of proteins and their posttranslationally modified counterparts that serves as a hub for cell signaling and signal transduction. The surfaceome plays crucial roles in mediating interactions between cells and the extracellular environment, which combined with their availability at the cell surface make it an attractive therapeutic target. Despite its importance, the development of technologies to selectively target cell surface proteins for empirical identification is challenged by their structural complexity. Here, we describe a proximity labeling-based technique to covalently label proteins at the cell surface with a biotin handle, enabling downstream streptavidin-based enrichment and manipulation in a variety of modalities, including fluorescence imaging, western blotting, and mass spectrometry-based proteomics.

摘要

在细胞表面蛋白质、脂质和碳水化合物的复杂相互作用中,存在着表面蛋白质组,这是一层密集的蛋白质及其翻译后修饰的对应物,它作为细胞信号传导和信号转导的枢纽。表面蛋白质组在介导细胞与细胞外环境之间的相互作用中起着关键作用,再加上它们在细胞表面的可及性,使其成为一个有吸引力的治疗靶点。尽管其很重要,但开发用于选择性靶向细胞表面蛋白质以进行经验性鉴定的技术仍面临其结构复杂性的挑战。在此,我们描述了一种基于邻近标记的技术,用于用生物素标签共价标记细胞表面的蛋白质,从而能够在包括荧光成像、蛋白质免疫印迹和基于质谱的蛋白质组学等多种模式下进行下游基于链霉亲和素的富集和操作。

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