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新型1,3,4-恶二唑并异吲哚啉-1,3-二酮衍生物作为潜在抗癌剂的发现:设计、机器学习、合成、分子对接、ADMET、DFT和分子动力学模拟

Discovery of newer 1,3,4-Oxadiazole clubbed Isoindoline-1,3-dione derivatives as potential anticancer agents: Design, machine learning, synthesis, molecular docking, ADMET, DFT and MD simulation.

作者信息

Matore Balaji Wamanrao, Murmu Anjali, Banjare Purusottam, Vishvakarma Naveen Kumar, Roy Partha Pratim, Singh Jagadish

机构信息

Laboratory of Drug Discovery and Ecotoxicology, Department of Pharmacy, Guru Ghasidas Vishwavidyalaya (A Central University), Bilaspur 495009, India.

Department of Biotechnology, Guru Ghasidas Vishwavidyalaya (A Central University), Bilaspur 495009, India.

出版信息

Comput Biol Chem. 2025 Oct;118:108492. doi: 10.1016/j.compbiolchem.2025.108492. Epub 2025 Apr 26.

Abstract

Cancer remains to be the second leading cause of death, since the available drugs and therapies may get failure due to the early-stage drug resistance, metastasis, poor pharmacokinetics, and toxic effects. This gap can be fulfilled by designing potential anticancer agent with the Phthalimide as a prime scaffold. The robust and reliable pharmacophore model was used for the designing of newer Phthalimide derivatives. Additionally, we clubbed 1,3,4-Oxadiazole with Phthalimide to fulfil these features. The predicted IC for all the designed compounds are in µM range and DFT study also confirmed the reactive nature of these molecules. The designed compounds were synthesized and characterized by FT-IR, H NMR, C NMR and Mass spectroscopy. The in-vitro anticancer evaluation was carried out by performing MTT assay on MCF-7 and HCT-116 cancer cell lines. All compounds showed moderate to potent anticancer activity. The compound B19 was found to be the most potent against both the MCF-7 and HCT-116 with IC of 3.468 and 4.508 µM respectively. All the compounds showed good docking score in terms of binding affinity, lib dock score, CDOCKER interaction and binding free energy. MD Simulation study reviled good stability, compactness and rigidity of potent compound throughout the 100 ns run. ADMET results supports the good pharmacokinetics and lower toxicity. In conclusion, we suggest the compound B19 is potential drug-like candidate can be utilized in anticancer treatment on further confirmations. This study is widely useful for the medicinal chemists and scientific community.

摘要

癌症仍然是第二大致死原因,因为现有的药物和疗法可能会因早期耐药性、转移、不良的药代动力学和毒性作用而失效。通过设计以邻苯二甲酰亚胺为主要骨架的潜在抗癌剂,可以填补这一空白。稳健可靠的药效团模型被用于设计新型邻苯二甲酰亚胺衍生物。此外,我们将1,3,4-恶二唑与邻苯二甲酰亚胺结合以满足这些特性。所有设计化合物的预测IC值在微摩尔范围内,密度泛函理论(DFT)研究也证实了这些分子的反应活性。设计的化合物通过傅里叶变换红外光谱(FT-IR)、氢核磁共振(H NMR)、碳核磁共振(C NMR)和质谱进行合成和表征。通过对MCF-7和HCT-116癌细胞系进行MTT试验进行体外抗癌评估。所有化合物均表现出中度至强效的抗癌活性。发现化合物B19对MCF-7和HCT-116的活性最强,IC值分别为3.468和4.508微摩尔。所有化合物在结合亲和力、lib dock评分、CDOCKER相互作用和结合自由能方面均显示出良好的对接分数。分子动力学(MD)模拟研究表明,在整个100纳秒的运行过程中,强效化合物具有良好的稳定性、紧凑性和刚性。药物代谢动力学(ADMET)结果支持良好的药代动力学和较低的毒性。总之,我们建议化合物B19是一种潜在的类药物候选物,经进一步确认后可用于抗癌治疗。这项研究对药物化学家及科学界具有广泛的用途。

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