Ikegwuoha Nompumelelo Philile Praiseworth, Hanekom Thea, Booysen Elzaan, Jason Corbyn, Parker-Nance Shirley, Davies-Coleman Michael T, van Zyl Leonardo Joaquim, Trindade Marla
Department of Biotechnology, Institute for Microbial Biotechnology and Metagenomics (IMBM), University of the Western Cape, Cape Town, South Africa.
Department of Zoology, Nelson Mandela Metropolitan University, University Way, Port Elizabeth, South Africa.
Microb Biotechnol. 2025 May;18(5):e70155. doi: 10.1111/1751-7915.70155.
Low iron levels in marine habitats necessitate the production of structurally diverse siderophores by many marine bacterial species for iron acquisition. Siderophores exhibit bioactivities ranging from chelation for iron reduction in hemochromatosis sufferers to antimicrobial activity either in their own right or when coupled to known antibiotics for targeted delivery or for molecular imaging. Thus, marine environments are a sought-after resource for novel siderophores that could have pharmaceutical or industrial application. The fimsbactins A-F (1-6) are mixed catechol-hydroxamate siderophores that have only been reported to be produced by Acinetobacter species with the fimsbactin biosynthetic gene clusters (BGCs) widespread among species within this genus. Here, we identified a putative fimsbactin BGC from an uncharacterized marine isolate, Marinomonas sp. PE14-40. Not only was the gene synteny not conserved when comparing the pathway from Marinomonas sp. PE14-40 to the fimsbactin BGC from Acinetobacter sp., but five of the core biosynthetic genes found in the canonical fimsbactin BGC are located elsewhere on the genome and do not form part of the core cluster in Marinomonas sp. PE14-40, with four of these, fbsBCDL, colocalized. Through ESI-MS/MS analysis of extracts from Marinomonas sp. PE14-40, the known fimsbactin analogues 1 and 6 were identified, as well as two new fimsbactin analogues, 7 and 8, containing a previously unreported L-lysine-derived hydroxamate moiety, N-acetyl-N-hydroxycadaverine. Feeding experiments using stable isotope-label L-lysine provided further evidence of the N-acetyl-N-hydroxycadaverine moiety in 7 and 8. The study demonstrates functional conservation in seemingly disparate biosynthetic pathways and enzyme promiscuity's role in producing structurally diverse compounds.
海洋栖息地中的低铁水平使得许多海洋细菌物种必须产生结构多样的铁载体以获取铁。铁载体具有多种生物活性,从螯合作用以降低血色素沉着症患者体内的铁含量,到自身具有抗菌活性,或者与已知抗生素偶联用于靶向递送或分子成像。因此,海洋环境是寻找可能具有药物或工业应用的新型铁载体的理想资源。Fimsbactins A-F(1-6)是混合的儿茶酚-异羟肟酸铁载体,据报道仅由不动杆菌属物种产生,其fimsbactin生物合成基因簇(BGCs)在该属的物种中广泛存在。在此,我们从一种未鉴定的海洋分离株Marinomonas sp. PE14-40中鉴定出一个假定的fimsbactin BGC。当比较Marinomonas sp. PE14-40的途径与不动杆菌属的fimsbactin BGC时,不仅基因排列不保守,而且在典型的fimsbactin BGC中发现的五个核心生物合成基因位于基因组的其他位置,在Marinomonas sp. PE14-40中不构成核心簇的一部分,其中四个基因fbsBCDL共定位。通过对Marinomonas sp. PE14-40提取物的电喷雾串联质谱(ESI-MS/MS)分析,鉴定出了已知的fimsbactin类似物1和6,以及两种新的fimsbactin类似物7和8,它们含有一个以前未报道的L-赖氨酸衍生的异羟肟酸部分,N-乙酰-N-羟基尸胺。使用稳定同位素标记的L-赖氨酸进行的喂养实验进一步证明了7和8中存在N-乙酰-N-羟基尸胺部分。该研究证明了看似不同的生物合成途径中的功能保守性以及酶的多效性在产生结构多样的化合物中的作用。